v0.6.0-alpha

This is a major overhaul of YAVSAP to make it use nf-core's DSL2 modules.

Added

• Interleaved and Single-end Illumina read support (#34)
• nf-core compliance
• SARS-CoV2 genome preset
• Support for tarballed and/or remote Kraken2 database

Changed

• Multiple sequence alignments and phylogenetic trees now include all samples collectively

Removed

• --pe and --ont parameters (#34)
• de novo assembly steps and parameters