doc fixes

NAMESPACE

@@ -3,6 +3,7 @@
 S3method("*",FunctionalGroup)
 S3method("+",FunctionalGroup)
 S3method(plot,ModvegeSite)
+export(Autocut)
 export(FG_A)
 export(FG_B)
 export(FG_C)
@@ -12,6 +13,8 @@ export(ManagementData)
 export(ModvegeEnvironment)
 export(ModvegeParameters)
 export(ModvegeSite)
+export(PetersenAutocut)
+export(PhenologicalAutocut)
 export(PscanPlotter)
 export(SEA)
 export(WeatherData)
@@ -30,11 +33,7 @@ export(fCO2_transpiration_mod)
 export(fPAR)
 export(fT)
 export(fW)
-export(get_annual_gross_yield)
 export(get_bias)
-export(get_end_of_cutting_season)
-export(get_expected_n_cuts)
-export(get_relative_cut_contribution)
 export(growR_package_options)
 export(growR_run_loop)
 export(load_data_for_sites)

README.md

@@ -91,7 +91,7 @@ install.packages("growR")
 
 Installing from source might make sense if...
 
-- you intend on making changes to the model[^3],
+- you intend on making changes to the model[^11],
 - you want to contribute to package development and maintenance,
 - you want to get access to the cutting edge version, which may have changes
   not yet available on the CRAN version but is also likely less stable,
@@ -275,6 +275,6 @@ Assessing Livestock Production under Climate Change.” Agriculture, Ecosystems
 
 
 
-[^3]: If you make changes that generally improve `growR`, it would be great if you could 
+[^11]: If you make changes that generally improve `growR`, it would be great if you could 
 share them to make them available to all future users. See [Contributing](#contributing).
 

_pkgdown.yml

@@ -57,6 +57,12 @@ reference:
 - contents:
   - PscanPlotter
   - Combinator
+- title: Autocut
+  desc: Cut decision algorithms
+- contents:
+  - Autocut
+  - PhenologicalAutocut
+  - PetersenAutocut
 - title: Debug Tools
   desc: Utilities that may be of help if things go wrong.
 - contents:
@@ -69,7 +75,6 @@ reference:
   - aCO2_inverse
   - append_to_table
   - atmospheric_CO2
-  - autocut
   - build_functional_group
   - check_for_package
   - compare.R
@@ -82,10 +87,6 @@ reference:
   - fPAR
   - fT
   - fW
-  - get_annual_gross_yield
-  - get_end_of_cutting_season
-  - get_expected_n_cuts
-  - get_relative_cut_contribution
   - get_site_name
   - growR_package_options
   - management_parameters

inst/REFERENCES.bib

@@ -87,7 +87,7 @@ @article{huguenin2017GrundlagenDuengung
   url = {https://www.agrarforschungschweiz.ch/2017/06/9-duengung-von-grasland-grud-2017/},
   year = {2017},
   journal = {Agrarforschung Schweiz},
-  author = {Huguenin-Elie, Ilivier, Eric Mosimann, Patrick Schlegel, Andreas Lüscher, Willy Kessler, and Bernard Jeangros} 
+  author = {Huguenin-Elie, Ilivier and Mosimann, Eric and Schlegel, Patrick and Lüscher, Andreas and Kessler, Willy and Jeangros, Bernard} 
 }
 
 @article{calanca2016TestingAbilitySimple,