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Update bgd to bw conversion in callpeak_macs2.bds #5

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Update bgd to bw conversion in callpeak_macs2.bds #5

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4 changes: 2 additions & 2 deletions modules/callpeak_macs2.bds
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Original file line number Diff line number Diff line change
Expand Up @@ -113,7 +113,7 @@ string[] _macs2( string tag, string ctl_tag, string fraglen, bool make_sig, \
slopBed -i "$prefix"_FE.bdg -g $chrsz -b 0 | awk '{if ($3 != -1) print $0}' | bedClip stdin $chrsz $fc_bedgraph; \
rm -f "$prefix"_FE.bdg; \
\
sort -k1,1 -k2,2n $fc_bedgraph > $fc_bedgraph_srt; \
LC_COLLATE=C sort -k1,1 -k2,2n $fc_bedgraph > $fc_bedgraph_srt; \
bedGraphToBigWig $fc_bedgraph_srt $chrsz $fc_bigwig; \
rm -f $fc_bedgraph $fc_bedgraph_srt; \
\
Expand All @@ -123,7 +123,7 @@ string[] _macs2( string tag, string ctl_tag, string fraglen, bool make_sig, \
slopBed -i "$prefix"_ppois.bdg -g $chrsz -b 0 | awk '{if ($3 != -1) print $0}' | bedClip stdin $chrsz $peak_o_dir/$prefix_basename.pval.signal.bedgraph; \
rm -rf "$prefix"_ppois.bdg; \
\
sort -k1,1 -k2,2n $pval_bedgraph > $pval_bedgraph_srt; \
LC_COLLATE=C sort -k1,1 -k2,2n $pval_bedgraph > $pval_bedgraph_srt; \
bedGraphToBigWig $pval_bedgraph_srt $chrsz $pval_bigwig; \
\
rm -f $pval_bedgraph $pval_bedgraph_srt; \
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