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@kusterlab

Kuster Lab

The Kuster Lab comprises an international research team with a focus on proteomics, chemical biology and biomarker discovery

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  1. prosit prosit Public archive

    Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…

    Python 85 45

  2. SIMSI-Transfer SIMSI-Transfer Public

    Similarity-based Isobaric MS2 Identification Transfer

    Python 2 3

Repositories

Showing 10 of 26 repositories
  • ProSIMSIt Public
    kusterlab/ProSIMSIt’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Dec 20, 2024
  • picked_group_fdr Public

    Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments

    kusterlab/picked_group_fdr’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 5 6 0 Updated Dec 18, 2024
  • psite_annotation Public

    Python module for annotating a pandas dataframe with phosphosites, e.g. PhosphoSitePlus annotations, kinase-substrate relations, domain information, etc.

    kusterlab/psite_annotation’s past year of commit activity
    Python 4 Apache-2.0 0 2 0 Updated Dec 2, 2024
  • enrichment-server Public
    kusterlab/enrichment-server’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Nov 27, 2024
  • biowc-pathwaygraph Public

    Interactive Visualization of Signaling Pathways

    kusterlab/biowc-pathwaygraph’s past year of commit activity
    TypeScript 2 Apache-2.0 0 0 0 Updated Nov 27, 2024
  • pathway-importer Public

    Download and Convert Pathways from KEGG and WikiPathways

    kusterlab/pathway-importer’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 27, 2024
  • SIMSI-Transfer Public

    Similarity-based Isobaric MS2 Identification Transfer

    kusterlab/SIMSI-Transfer’s past year of commit activity
    Python 2 Apache-2.0 3 7 0 Updated Nov 19, 2024
  • curve_curator Public

    Analysis platform for large-scale dose-dependent data

    kusterlab/curve_curator’s past year of commit activity
    Python 22 Apache-2.0 3 4 0 Updated Nov 5, 2024
  • Gem_synergy Public

    Code to analyze and plot data from S. Hoefer et al. 2024.

    kusterlab/Gem_synergy’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Sep 18, 2024
  • TIC_Normalization Public

    R script and exemplary input and output files for the TIC normalization approach.

    kusterlab/TIC_Normalization’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Aug 22, 2024
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