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A USER ERROR has occurred (version 3.8-0-ge9d806836):

Status: Open.

#11 In lanagarmire/SSrGE;

· elbakrifz opened on Jul 14, 2020

GATK RealigneTargetCreator error

Status: Open.

#10 In lanagarmire/SSrGE;

· elbakrifz opened on Jul 14, 2020

extract_matrices_from_dataset.py error message

Status: Open.

#9 In lanagarmire/SSrGE;

· niklaslang opened on Jul 11, 2019

Creating SNV matrix from VCF

Status: Open.

#7 In lanagarmire/SSrGE;

· coh-racng opened on May 8, 2019

Could 10x singlecell apply in snv_calling?

Status: Open.

#6 In lanagarmire/SSrGE;

· gerrardmai opened on Dec 13, 2018

The link of reference did not exist

Status: Open.

#5 In lanagarmire/SSrGE;

· gerrardmai opened on Dec 6, 2018

GATK: '-T' is not a valid command

Status: Open.

#3 In lanagarmire/SSrGE;

· FarzanT opened on Dec 4, 2018

Name inconsistency between config and scripts

Status: Open.

#2 In lanagarmire/SSrGE;

· FarzanT opened on Dec 1, 2018

Installation test error

Status: Open.

#1 In lanagarmire/SSrGE;

· arvindsundaram opened on Jan 19, 2017