SV Properties

Computes various SV statistics from an input VCF file.

Installation

git clone --recursive https://github.com/tobiasrausch/svprops.git

cd svprops/

make all

Usage

./src/svprops [sv.vcf|sv.bcf|sv.vcf.gz] > sv.tab

./src/sampleprops [sv.vcf|sv.bcf|sv.vcf.gz] > sample.tab

Plotting

Rscript R/svprops.R sv.tab

Rscript R/svprops.R sample.tab