derfinder software paper analyses

Name		Name	Last commit message	Last commit date
Latest commit History 253 Commits
additional-analyses		additional-analyses
brainspan		brainspan
figure1		figure1
figure2		figure2
gff		gff
gtex		gtex
hippo		hippo
simulation		simulation
supTab1		supTab1
supTab2		supTab2
timing		timing
venn		venn
.gitignore		.gitignore
.nojekyll		.nojekyll
LICENSE		LICENSE
README.md		README.md
check-analysis-time.R		check-analysis-time.R
index.Rmd		index.Rmd
index.html		index.html
optional1-sortSam.sh		optional1-sortSam.sh
optional2-HTSeq.sh		optional2-HTSeq.sh
optional3-summOv.R		optional3-summOv.R
optional3-summOv.sh		optional3-summOv.sh
run-all.sh		run-all.sh
step1-fullCoverage.R		step1-fullCoverage.R
step1-fullCoverage.sh		step1-fullCoverage.sh
step2-makeModels.R		step2-makeModels.R
step2-makeModels.sh		step2-makeModels.sh
step3-analyzeChr.R		step3-analyzeChr.R
step3-analyzeChr.sh		step3-analyzeChr.sh
step4-mergeResults.sh		step4-mergeResults.sh
step5-derfinderReport.sh		step5-derfinderReport.sh
step6-regionMatrix.sh		step6-regionMatrix.sh
step7-regMatVsDERs.Rmd		step7-regMatVsDERs.Rmd
step7-regMatVsDERs.sh		step7-regMatVsDERs.sh
step8-coverageToExon.R		step8-coverageToExon.R
step8-coverageToExon.sh		step8-coverageToExon.sh
step9-summaryInfo.R		step9-summaryInfo.R
step9-summaryInfo.Rmd		step9-summaryInfo.Rmd
step9-summaryInfo.sh		step9-summaryInfo.sh

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