v1.30.0 -- workaround https://github.com/lawremi/rtracklayer/issues/83 #62
Annotations
3 errors and 34 warnings
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Install dependencies pass 2
Failed to install 'recount' from local:
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Install dependencies pass 2
Process completed with exit code 1.
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Setup R from r-lib
No such keg: /opt/homebrew/Cellar/r
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 2
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Query dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install macOS system dependencies
harfbuzz 8.4.0 is already installed and up-to-date.
To reinstall 8.4.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
macOS's Gatekeeper has been disabled for this Cask
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Setup R from r-lib
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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Setup R from r-lib
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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