Run with batch fix (#9)

Removes the error `ln: failed to create symbolic link '/data/exomiser-data-bundle': No such file or directory` when run with batch
lifebit-ai · Jul 17, 2023 · 5a5a987 · 5a5a987
1 parent 089ec85
commit 5a5a987
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/main.nf b/main.nf
@@ -130,6 +130,8 @@ process exomiser {
     def exomiser = "java -Xms2g -Xmx4g -jar "+"${exomiser_executable}"
     """
     # link the staged/downloaded data to predefined path
+    mkdir -p /data
+    mkdir -p /data/exomiser-data-bundle
     ln -s "\$PWD/$exomiser_data/" /data/exomiser-data-bundle
 
     ls -l