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|---|---|---|
| @@ -1,9 +1,9 @@ | ||
| params { | ||
| input = "${params.reference_data_bucket}/pipelines/parabricks/germline/output/HG001-NA12878-pFDA_S1_L001_20k.vcf" | ||
| // input = 'https://lifebit-featured-datasets.s3-eu-west-1.amazonaws.com/pipelines/parabricks/germline/output/HG001-NA12878-pFDA_S1_L001_20k.vcf' | ||
| sample_name = 'HG001_NA12878' | ||
| // input = "https://lifebit-featured-datasets.s3-eu-west-1.amazonaws.com/pipelines/parabricks/germline/output/HG001-NA12878-pFDA_S1_L001_20k.vcf" | ||
| sample_name = "HG001_NA12878" | ||
| hpo_terms_file = "${params.reference_data_bucket}/pipelines/exomiser-nf/hpo_terms_file.txt" | ||
| prioritisers = 'hiPhivePrioritiser' | ||
| exomiser_profile_files = 'full' | ||
| prioritisers = "hiPhivePrioritiser" | ||
| exomiser_profile_files = "full" | ||
| application_properties = "${params.reference_data_bucket}/pipelines/exomiser-nf/application.properties" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,7 @@ | ||
| params { | ||
| families_file = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/fam_file.tsv' | ||
| prioritisers = 'hiPhivePrioritiser' | ||
| exomiser_profile_files = 'full' | ||
| application_properties = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/application.properties' | ||
| auto_config_yml = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/auto_config.yml' | ||
| families_file = "${params.reference_data_bucket}/pipelines/exomiser-nf/fam_file.tsv" | ||
| prioritisers = "hiPhivePrioritiser" | ||
| exomiser_profile_files = "full" | ||
| application_properties = "${params.reference_data_bucket}/pipelines/exomiser-nf/application.properties" | ||
| auto_config_yml = "${params.reference_data_bucket}/pipelines/exomiser-nf/auto_config.yml" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,7 @@ | ||
| params { | ||
| families_file = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/fam_file_multi_hpo.tsv' | ||
| prioritisers = 'hiPhivePrioritiser' | ||
| exomiser_profile_files = 'full' | ||
| application_properties = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/application.properties' | ||
| auto_config_yml = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/auto_config.yml' | ||
| families_file = "${params.reference_data_bucket}/pipelines/exomiser-nf/fam_file_multi_hpo.tsv" | ||
| prioritisers = "hiPhivePrioritiser" | ||
| exomiser_profile_files = "full" | ||
| application_properties = "${params.reference_data_bucket}/pipelines/exomiser-nf/application.properties" | ||
| auto_config_yml = "${params.reference_data_bucket}/pipelines/exomiser-nf/auto_config.yml" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,8 @@ | ||
| params { | ||
| families_file = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/single_vcf.tsv' | ||
| hpo_terms_file = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/hpo_terms_file.txt' | ||
| prioritisers = 'hiPhivePrioritiser' | ||
| exomiser_profile_files = 'full' | ||
| application_properties = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/application.properties' | ||
| auto_config_yml = 's3://lifebit-featured-datasets/pipelines/exomiser-nf/auto_config.yml' | ||
| families_file = "${params.reference_data_bucket}/pipelines/exomiser-nf/single_vcf.tsv" | ||
| hpo_terms_file = "${params.reference_data_bucket}/pipelines/exomiser-nf/hpo_terms_file.txt" | ||
| prioritisers = "hiPhivePrioritiser" | ||
| exomiser_profile_files = "full" | ||
| application_properties = "${params.reference_data_bucket}/pipelines/exomiser-nf/application.properties" | ||
| auto_config_yml = "${params.reference_data_bucket}/pipelines/exomiser-nf/auto_config.yml" | ||
| } |