2.4.1

Improve

• In Cellranger workflow:
  • Fixed RNA Profiling now accepts custom probe set references (#381 by @yihming )
• In STARsolo workflow:
  • Add limitBAMsortRAM and outBAMsortingBinsN inputs to handle out-of-memory error in BAM sorting phase. (#375 by @yihming )
• In GeoMx_fastq_to_dcc workflow:
  • Support multiple FASTQ folders as input. (#380 by @joshua-gould )

Updates

• In Demultiplexing workflow:
  • Upgrade souporcell_version to 2022.12, which is based on commit 9fb527 on 2022/12/13. (#376 by @yihming )
• In STARsolo workflow:
  • Upgrade star_version to 2.7.10b. (#379 by @yihming )

Bug Fixes

• In Spaceranger workflow:
  • Fix the image localization issue for CytAssist samples. (#382 by @yihming )