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Fix db.stats and db.select_groups for timestamps #457

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Jul 20, 2023
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13 changes: 7 additions & 6 deletions src/data/dataset.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
"""The interface for the database."""
import abc
import datetime
import enum
from concurrent.futures import ThreadPoolExecutor
from datetime import datetime
from typing import Any, Iterator, Literal, Optional, Sequence, Union

import pandas as pd
Expand All @@ -11,7 +11,7 @@
from pydantic import StrictBool, StrictBytes, StrictFloat, StrictInt, StrictStr, validator

from ..embeddings.vector_store import VectorStore
from ..schema import VALUE_KEY, Bin, Path, PathTuple, Schema, normalize_path
from ..schema import VALUE_KEY, Bin, DataType, Path, PathTuple, Schema, normalize_path
from ..signals.signal import Signal, resolve_signal
from ..tasks import TaskStepId

Expand Down Expand Up @@ -44,8 +44,8 @@ class StatsResult(BaseModel):
approx_count_distinct: int

# Defined for ordinal features.
min_val: Optional[Union[float, datetime.date, datetime.datetime]]
max_val: Optional[Union[float, datetime.date, datetime.datetime]]
min_val: Optional[Union[float, datetime]]
max_val: Optional[Union[float, datetime]]

# Defined for text features.
avg_text_length: Optional[float]
Expand Down Expand Up @@ -187,7 +187,7 @@ def column_from_identifier(column: ColumnId) -> Column:
return Column(path=column)


FeatureValue = Union[StrictInt, StrictFloat, StrictBool, StrictStr, StrictBytes]
FeatureValue = Union[StrictInt, StrictFloat, StrictBool, StrictStr, StrictBytes, datetime]
FeatureListValue = list[StrictStr]
BinaryFilterTuple = tuple[Path, BinaryOp, FeatureValue]
ListFilterTuple = tuple[Path, ListOp, FeatureListValue]
Expand Down Expand Up @@ -409,7 +409,8 @@ def media(self, item_id: str, leaf_path: Path) -> MediaResult:

def default_settings(dataset: Dataset) -> DatasetSettings:
"""Gets the default settings for a dataset."""
leaf_paths = dataset.manifest().data_schema.leafs.keys()
schema = dataset.manifest().data_schema
leaf_paths = [path for path, field in schema.leafs.items() if field.dtype == DataType.STRING]
pool = ThreadPoolExecutor()
stats: list[StatsResult] = list(pool.map(lambda leaf: dataset.stats(leaf), leaf_paths))
sorted_stats = sorted([stat for stat in stats if stat.avg_text_length],
Expand Down
6 changes: 5 additions & 1 deletion src/data/dataset_duckdb.py
Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,7 @@
is_float,
is_integer,
is_ordinal,
is_temporal,
normalize_path,
signal_compute_type_supports_dtype,
)
Expand Down Expand Up @@ -602,7 +603,7 @@ def stats(self, leaf_path: Path) -> StatsResult:
min_max_query = f"""
SELECT MIN(val) AS minVal, MAX(val) AS maxVal
FROM (SELECT {inner_select} as val FROM t)
WHERE NOT isnan(val)
{'WHERE NOT isnan(val)' if is_float(leaf.dtype) else ''}
"""
row = self._query(min_max_query)[0]
result.min_val, result.max_val = row
Expand Down Expand Up @@ -692,6 +693,9 @@ def select_groups(
"""
df = self._query_df(query)
counts = list(df.itertuples(index=False, name=None))
if is_temporal(leaf.dtype):
# Replace any NaT with None and pd.Timestamp to native datetime objects.
counts = [(None if pd.isnull(val) else val.to_pydatetime(), count) for val, count in counts]
return SelectGroupsResult(too_many_distinct=False, counts=counts, bins=named_bins)

def _topk_udf_to_sort_by(
Expand Down
30 changes: 30 additions & 0 deletions src/data/dataset_select_groups_test.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
"""Tests for dataset.select_groups()."""

import re
from datetime import datetime

import pytest
from pytest_mock import MockerFixture
Expand Down Expand Up @@ -255,6 +256,35 @@ def test_filters(make_test_data: TestDataMaker) -> None:
assert result.counts == [(None, 1)]


def test_datetime(make_test_data: TestDataMaker) -> None:
items: list[Item] = [
{
UUID_COLUMN: '1',
'date': datetime(2023, 1, 1)
},
{
UUID_COLUMN: '2',
'date': datetime(2023, 1, 15)
},
{
UUID_COLUMN: '2',
'date': datetime(2023, 2, 1)
},
{
UUID_COLUMN: '4',
'date': datetime(2023, 3, 1)
},
{
UUID_COLUMN: '5',
# Missing datetime.
}
]
dataset = make_test_data(items)
result = dataset.select_groups('date')
assert result.counts == [(datetime(2023, 1, 1), 1), (datetime(2023, 1, 15), 1),
(datetime(2023, 2, 1), 1), (datetime(2023, 3, 1), 1), (None, 1)]


def test_invalid_leaf(make_test_data: TestDataMaker) -> None:
items: list[Item] = [
{
Expand Down
34 changes: 34 additions & 0 deletions src/data/dataset_stats_test.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
"""Tests for dataset.stats()."""

from datetime import datetime
from typing import Any, cast

import pytest
Expand Down Expand Up @@ -123,3 +124,36 @@ def test_error_handling(make_test_data: TestDataMaker) -> None:

with pytest.raises(ValueError, match="Path \\('unknown',\\) not found in schema"):
dataset.stats(leaf_path='unknown')


def test_datetime(make_test_data: TestDataMaker) -> None:
items: list[Item] = [
{
UUID_COLUMN: '1',
'date': datetime(2023, 1, 1)
},
{
UUID_COLUMN: '2',
'date': datetime(2023, 1, 15)
},
{
UUID_COLUMN: '2',
'date': datetime(2023, 2, 1)
},
{
UUID_COLUMN: '4',
'date': datetime(2023, 3, 1)
},
{
UUID_COLUMN: '5',
# Missing datetime.
}
]
dataset = make_test_data(items)
result = dataset.stats('date')
assert result == StatsResult(
path=('date',),
total_count=4,
approx_count_distinct=4,
min_val=datetime(2023, 1, 1),
max_val=datetime(2023, 3, 1))
3 changes: 3 additions & 0 deletions src/data/dataset_test_utils.py
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
"""Tests utils of for dataset_test."""
import os
import pathlib
from datetime import datetime
from typing import Optional, Type, cast

from typing_extensions import Protocol
Expand Down Expand Up @@ -36,6 +37,8 @@ def _infer_dtype(value: Item) -> DataType:
return DataType.FLOAT32
elif isinstance(value, int):
return DataType.INT32
elif isinstance(value, datetime):
return DataType.TIMESTAMP
else:
raise ValueError(f'Cannot infer dtype of primitive value: {value}')

Expand Down