Update CloneAllOrganizationRepositoriesByHTTPS script to support pagination for organizations with more than 100 repositories

[konard]

Summary

This PR addresses issue #8 by updating the CloneAllOrganizationRepositoriesByHTTPS.sh script to handle organizations with more than 100 repositories through proper API pagination.

Changes Made

• Added pagination support: Implemented fetch_all_repositories() function that automatically handles GitHub API pagination
• Increased reliability: Proper error handling for invalid JSON responses and API failures
• Maintained compatibility: The script works exactly the same way for users, no breaking changes
• Improved efficiency: Uses per_page=100 instead of per_page=200 and fetches all pages as needed
• Better diagnostics: All status messages go to stderr, avoiding JSON corruption

Technical Details

The original script used a single API call with per_page=200, which would miss repositories when an organization has more than 200 repos. The GitHub API has a maximum limit and uses pagination for large result sets.

The new implementation:

1. Fetches repositories page by page using per_page=100
2. Continues until all pages are retrieved (when a page returns fewer than 100 repos)
3. Combines all pages into a single JSON array using temporary files
4. Provides progress feedback via stderr
5. Cleans up temporary files automatically

Testing

• ✅ Tested with linksplatform organization (85 repositories)
• ✅ Verified pagination works with smaller page sizes (10 per page)
• ✅ Confirmed all repository clone URLs are correctly extracted
• ✅ Validated that the script maintains backward compatibility
• ✅ Tested error handling for invalid responses

The script is now ready to handle organizations with any number of repositories, resolving the issue for when LinksPlatform grows beyond 100 repositories.

Fixes #8

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