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1. AlphaFold-StepByStep AlphaFold-StepByStep Public

   Run AlphaFold2 (and multimer) step by step

   Python 34 5

2. icSHAPE-pipe icSHAPE-pipe Public

   Pipeline to calculate icSHAPE score in genome with sliding window strategy

   C++ 9 7

3. GAP GAP Public

   GFF Annotation Paser (GAP) is a tool for parsing Gencode/Ensembl GTF and NCBI GFF3 genome annotation files.

   Python 7 2

4. IPyRSSA IPyRSSA Public

   Integrative Python library for RNA Secondary Structure Analysis

   PostScript 14 3

5. RNA_Covariation RNA_Covariation Public

   A tutorial about RNA covary base pairs calling

   Python 5 1

6. SPOT-RNA SPOT-RNA Public

   *PyTorch implementations* of SPOT-RNA [Singh et al., 2019](https://doi.org/10.1038/s41467-019-13395-9). See the results and the discussion in Deep_Into_SPOT-RNA.pdf

   Python