Mitochondrial Long-read Iterative Assembly (MLIA)

Tools

MLIA.sh

The shell scripts of Mitochondrial Long-read Iterative Assembly (MLIA) pipeline

MLIA.smk

Mitochondrial Long-read Iterative Assembly (MLIA) pipeline created by the Snakemake workflow management system.

Requirements

• Linux system
• Canu v2
• minimap2
• seqtk

• If you want to use this script, you will need to substitute all of your own appropriate paths to folders and files.

cite

• Ji, X., Tian, Y., Liu, W., Lin, C., He, F., Yang, J., Miao, W., & Li, Z. (2023). Mitochondrial characteristics of the powdery mildew genus Erysiphe revealed an extraordinary evolution in protein-coding genes. International journal of biological macromolecules, 230, 123153. https://doi.org/10.1016/j.ijbiomac.2023.123153
• Li, Z., Yang, J., Ji, X., Liu, J., Yin, C., Bhadauria, V., Zhao, W., & Peng, Y. L. (2024). First telomere-to-telomere gapless assembly of the rice blast fungus Pyricularia oryzae. Scientific data, 11(1), 380. https://doi.org/10.1038/s41597-024-03209-z