Update RNA tutorial

liulab-dfci · Apr 12, 2020 · 66f5d1a · 66f5d1a
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commit 66f5d1a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/example/RNA_infrastructure_10x/RNA_infrastructure_10x.md b/example/RNA_infrastructure_10x/RNA_infrastructure_10x.md
@@ -82,7 +82,7 @@ Arguments  |  Description
 
 Arguments  |  Description
 ---------  |  -----------
-`--mapindex` | Genome index directory for STAR. Users can just download the index file from [here](http://cistrome.org/~chenfei/MAESTRO/Refdata_scRNA_MAESTRO_GRCh38_1.1.0.tar.gz) and decompress it. Then specify the index directory for STAR, for example, `--mapindex Refdata_scRNA_MAESTRO_GRCh38_1.1.0/GRCh38_STAR_2.7.3a`.
+`--mapindex` | Genome index directory for STAR. Users can just download the index file for [human](http://cistrome.org/~chenfei/MAESTRO/Refdata_scRNA_MAESTRO_GRCh38_1.1.0.tar.gz) and [mouse](http://cistrome.org/~chenfei/MAESTRO/Refdata_scRNA_MAESTRO_GRCm38_1.1.0.tar.gz) from CistromeDB and decompress them. Then specify the index directory for STAR, for example, `--mapindex Refdata_scRNA_MAESTRO_GRCh38_1.1.0/GRCh38_STAR_2.7.3a`.
 `--rsem` | The prefix of transcript references for RSEM used by rsem-prepare-reference (Only required when the platform is Smartseq2). Users can directly download the reference file for [human](http://cistrome.org/~chenfei/MAESTRO/Refdata_scRNA_MAESTRO_GRCh38_1.1.0.tar.gz) and [mouse](http://cistrome.org/~chenfei/MAESTRO/Refdata_scRNA_MAESTRO_GRCm38_1.1.0.tar.gz) from CistromeDB and decompress them. Then specify the prefix for RSEM, for example, `--rsem Refdata_scRNA_MAESTRO_GRCh38_1.1.0/GRCh38_RSEM_1.3.2/GRCh38`.
 
 **Barcode arguments, for platform of 'Dropseq' or '10x-genomics':**