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ljljolinq1010 authored Nov 19, 2024
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Expand Up @@ -2,17 +2,18 @@ The repository contains scripts and data from the study: "Dissecting the Regulat

1. This tutorial provides step-by-step instructions on how to use scMultiome data to perform the following analyses:

The tutorial is here: https://ljljolinq1010.github.io/zebrafish-single-cell-multi-omics-study/tutorial_scMultiome.html

The scMultiome data is here: https://drive.google.com/file/d/1qQGUSENjQ0ohZDtvcnejS6XKS0H0HrCW/view?usp=drive_link

A. Identify putative enhancers for genes of interest

B. Plot gene expression, chromatin accessibility, and the association score for genes of interest

C. Idnetify the transcription factor binding site for the peaks of interest through motif scaning

D. Motif entichment analysis for cell type specific peaks

The tutorial is here: https://ljljolinq1010.github.io/zebrafish-single-cell-multi-omics-study/tutorial_scMultiome.html

The scMultiome data is here: https://drive.google.com/file/d/1qQGUSENjQ0ohZDtvcnejS6XKS0H0HrCW/view?usp=drive_link




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