fixed fasta parser

requirements.txt

@@ -1 +1 @@
-pyfastx==1.1.0
+pyfastx==2.0.1

src/atr.c

@@ -18,7 +18,7 @@ static PyObject* pytrf_atr_repr(pytrf_ATR *self) {
 }
 
 static PyObject* pytrf_atr_as_list(pytrf_ATR *self) {
-	return Py_BuildValue("OnnOiiiiiif", self->seqid, self->start, self->end, self->motif, self->mlen,
+	return Py_BuildValue("OnnOiiiiiid", self->seqid, self->start, self->end, self->motif, self->mlen,
 						self->length, self->matches, self->substitutions, self->insertions,
 						self->deletions, self->identity);
 }

src/etr.h

@@ -21,15 +21,15 @@ typedef struct {
 	//tandem repeat element motif sequence
 	PyObject* motif;
 
-	//tandem repeat element motif length
-	int mlen;
-
 	//tandem repeat element start position
 	Py_ssize_t start;
 
 	//tandem repeat element stop position
 	Py_ssize_t end;
 
+	//tandem repeat element motif length
+	int mlen;
+
 	//number of tandem repeats
 	int repeats;
 

src/gtr.h

@@ -19,15 +19,15 @@ typedef struct {
 	//input sequence object
 	PyObject *seqobj;
 
-	//pointer to sequence object
-	const char *seq;
-
 	//sequence length
 	Py_ssize_t size;
 
 	//next start position for tandem repeat identification
 	Py_ssize_t next_start;
 
+	//pointer to sequence object
+	const char *seq;
+
 	//max motif length
 	int max_motif;
 

src/version.h

@@ -1 +1 @@
-#define PYTRF_VERSION "1.1.0"
+#define PYTRF_VERSION "1.1.1"