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<span class="menu-text"><span class="chapter-number">13</span>&nbsp; <span class="chapter-title">Differential expression</span></span></a>
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<section id="welcome" class="level1 unnumbered"><h1 class="unnumbered">Welcome</h1>
<p>This is the website for the online book <strong>‘Best Practices for Spatial Transcriptomics Analysis with Bioconductor’</strong>.</p>
<p>This book provides discussion and interactive examples on best practices for computational analysis workflows for spatial transcriptomics data, using <a href="http://bioconductor.org/">Bioconductor</a> in R. The chapters contain details on individual analysis steps and longer workflows, with interactive examples consisting of R code and example datasets.</p>
<p>The book is organized into several parts, including introductory materials, analysis steps, and longer workflows, for sequencing-based and imaging-based spatial transcriptomics platforms.</p>
<p>The book is organized into several parts, including introductory materials, analysis steps, and extended workflows, for sequencing-based and imaging-based spatial transcriptomics platforms.</p>
<p>Additional details on analysis workflows for non-spatial single-cell data as well as further introductory materials on R and Bioconductor can be found in the related book <a href="https://bioconductor.org/books/release/OSCA/">Orchestrating Single-Cell Analysis with Bioconductor (OSCA)</a>.</p>


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