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Use version 1 for preprocessing pipelines
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corneliusroemer committed May 21, 2024
1 parent b18efbf commit 026aa3e
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions kubernetes/loculus/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -852,11 +852,11 @@ defaultOrganismConfig: &defaultOrganismConfig
position: first
preprocessing:
- &preprocessing
version: 2
image: ghcr.io/loculus-project/preprocessing-nextclade
args:
- "prepro"
configFile: &preprocessingConfigFile
version: 1
log_level: DEBUG
nextclade_dataset_name: nextstrain/ebola/zaire
genes: [ NP, VP35, VP40, GP, sGP, ssGP, VP30, VP24, L ]
Expand Down Expand Up @@ -1115,7 +1115,7 @@ defaultOrganisms:
dateToSortBy: date
partitionBy: pango_lineage
preprocessing:
- version: 2
- version: 1
image: ghcr.io/loculus-project/preprocessing-dummy
args:
- "--watch"
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