feat(ci): add workflow dispatch to allow debugging of individual work…

…flows (#1166)

Also format workflows consistently with yaml formatter

.github/workflows/backend.yml

@@ -2,6 +2,7 @@ name: backend
 
 on:
   push:
+  workflow_dispatch:
 
 env:
   DOCKER_IMAGE_NAME: ghcr.io/loculus-project/backend

.github/workflows/config-preprocessor-build.yml

@@ -2,6 +2,7 @@ name: config-processor-build
 
 on:
   push:
+  workflow_dispatch:
 
 env:
   DOCKER_IMAGE_NAME: ghcr.io/loculus-project/config-processor

.github/workflows/docs-build.yml

@@ -3,25 +3,26 @@ name: Docs Build Check
 on:
   push:
     paths:
-      - 'docs/**'
+      - "docs/**"
+  workflow_dispatch:
 
 jobs:
   check-docs-build:
     runs-on: ubuntu-latest
 
     steps:
-    - name: Checkout Repository
-      uses: actions/checkout@v4
+      - name: Checkout Repository
+        uses: actions/checkout@v4
 
-    - name: Set up Node.js
-      uses: actions/setup-node@v2
-      with:
-        node-version: '20'
+      - name: Set up Node.js
+        uses: actions/setup-node@v2
+        with:
+          node-version: "20"
 
-    - name: Install Dependencies
-      run: npm install
-      working-directory: ./docs
+      - name: Install Dependencies
+        run: npm install
+        working-directory: ./docs
 
-    - name: Check Build
-      run: npm run build
-      working-directory: ./docs
+      - name: Check Build
+        run: npm run build
+        working-directory: ./docs

.github/workflows/docs-deploy.yml

@@ -13,27 +13,27 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - name: Checkout Repository
-      uses: actions/checkout@v4
-
-    - name: Set up Node.js
-      uses: actions/setup-node@v2
-      with:
-        node-version: '20'
-
-    - name: Navigate to docs directory
-      run: cd docs
-
-    - name: Install Dependencies
-      run: npm install
-      working-directory: ./docs
-
-    - name: Build Project
-      run: npm run build
-      working-directory: ./docs
-
-    - name: Deploy to GitHub Pages
-      uses: peaceiris/actions-gh-pages@v3
-      with:
-        github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: ./docs/dist  # Adjust if your build output directory is different
+      - name: Checkout Repository
+        uses: actions/checkout@v4
+
+      - name: Set up Node.js
+        uses: actions/setup-node@v2
+        with:
+          node-version: "20"
+
+      - name: Navigate to docs directory
+        run: cd docs
+
+      - name: Install Dependencies
+        run: npm install
+        working-directory: ./docs
+
+      - name: Build Project
+        run: npm run build
+        working-directory: ./docs
+
+      - name: Deploy to GitHub Pages
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./docs/dist # Adjust if your build output directory is different

.github/workflows/dummyPreprocessing.yml

@@ -2,6 +2,7 @@ name: preprocessing-dummy
 
 on:
   push:
+  workflow_dispatch:
 
 env:
   DOCKER_IMAGE_NAME: ghcr.io/loculus-project/preprocessing-dummy

.github/workflows/format-website-on-dispatch.yml

@@ -10,24 +10,24 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - name: Checkout Repository
-      uses: actions/checkout@v4
+      - name: Checkout Repository
+        uses: actions/checkout@v4
 
-    - name: Set up Node.js
-      uses: actions/setup-node@v2
-      with:
-        node-version: '20'
+      - name: Set up Node.js
+        uses: actions/setup-node@v2
+        with:
+          node-version: "20"
 
-    - name: NPM install and format website
-      working-directory: website
-      run: |
-        npm install
-        npm run format
+      - name: NPM install and format website
+        working-directory: website
+        run: |
+          npm install
+          npm run format
 
-    - name: Commit and Push Changes
-      run: |
-        git config --global user.name 'Loculus bot'
-        git config --global user.email 'bot@loculus.org'
-        git add -A
-        git commit -m "Automated code formatting" || echo "No changes to commit"
-        git push
+      - name: Commit and Push Changes
+        run: |
+          git config --global user.name 'Loculus bot'
+          git config --global user.email 'bot@loculus.org'
+          git add -A
+          git commit -m "Automated code formatting" || echo "No changes to commit"
+          git push

.github/workflows/node_dev.yml

@@ -3,38 +3,39 @@ name: Dev server test
 on:
   push:
     paths:
-      - 'website/**'
-      - 'deploy.py'
+      - "website/**"
+      - "deploy.py"
+  workflow_dispatch:
+
 jobs:
   test:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest, macOS-latest]
     steps:
-    - uses: azure/setup-helm@v3
-    - name: Checkout repository
-      uses: actions/checkout@v4
-    - name: Install yaml package
-      run: pip install PyYAML requests
+      - uses: azure/setup-helm@v3
+      - name: Checkout repository
+        uses: actions/checkout@v4
+      - name: Install yaml package
+        run: pip install PyYAML requests
+
+      - name: Generate local test config
+        run: ./generate_local_test_config.sh
+
+      - name: Install dependencies
+        working-directory: website
+        run: |
+          npm install
+          npm install playwright --save-dev
+
+      - name: Test dev node server
+        working-directory: website
+        run: |
+          npm run start &
+          npx playwright install chromium
+
 
-    - name: Generate local test config
-      run: ./generate_local_test_config.sh
-
-    - name: Install dependencies
-      working-directory: website
-      run: |
-        npm install
-        npm install playwright --save-dev
-    
-    - name: Test dev node server
-      working-directory: website
-      run: |
-        npm run start &
-        npx playwright install chromium
-   
-
-        npx playwright screenshot localhost:3000 test.png
-        sleep 5
-        npx playwright screenshot localhost:3000 test.png
-
+          npx playwright screenshot localhost:3000 test.png
+          sleep 5
+          npx playwright screenshot localhost:3000 test.png

.github/workflows/preprocessing-nextclade.yaml

@@ -2,6 +2,7 @@ name: preprocessing-nextclade
 
 on:
   push:
+  workflow_dispatch:
 
 env:
   DOCKER_IMAGE_NAME: ghcr.io/loculus-project/preprocessing-nextclade

.github/workflows/update-argocd-metadata.yml

@@ -4,6 +4,7 @@ on:
   push:
     branches:
       - main
+  workflow_dispatch:
 
 jobs:
   update:

.github/workflows/website.yml

@@ -2,6 +2,7 @@ name: website
 
 on:
   push:
+  workflow_dispatch:
 
 env:
   DOCKER_IMAGE_NAME: ghcr.io/loculus-project/website