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docs(backend): The reference genomes are included in the other backen…
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…d config by now
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fengelniederhammer committed Dec 9, 2023
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6 changes: 1 addition & 5 deletions backend/README.md
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Expand Up @@ -15,7 +15,7 @@ All commands mentioned in this section are run from the `backend` directory unle

```bash
../generate_local_test_config.sh
./gradlew bootRun --args='--spring.datasource.url=jdbc:postgresql://localhost:5432/pathoplexus --spring.datasource.username=postgres --spring.datasource.password=unsecure --backend.config.path=../website/tests/config/backend_config.json --backend.referenceGenome.path=../website/tests/config/reference_genomes.json'
./gradlew bootRun --args='--spring.datasource.url=jdbc:postgresql://localhost:5432/pathoplexus --spring.datasource.username=postgres --spring.datasource.password=unsecure --backend.config.path=../website/tests/config/backend_config.json --spring.security.oauth2.resourceserver.jwt.jwk-set-uri=http://localhost:8083/realms/pathoplexusRealm/protocol/openid-connect/certs'
```

#### Details
Expand All @@ -34,10 +34,6 @@ You need to set:
```
--backend.config.path=../website/tests/config/backend_config.json
```
* the path to the reference genome file:
```
--backend.referenceGenome.path=../website/tests/config/reference_genomes.json
```
* the url to fetch the public key for JWT verification
(corresponding to the `jwks_uri` value in the `/.well-known/openid-configuration` endpoint of the Keycloak server):
```
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