feat(ci): enable aarch64 builds for Nextclade (#1318)

* feat(ci): enable aarch64 builds for Nextclade * Use nextclade 3.3.1
loculus-project · Mar 10, 2024 · 9d9985f · 9d9985f
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commit 9d9985f
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diff --git a/.github/workflows/preprocessing-nextclade.yml b/.github/workflows/preprocessing-nextclade.yml
@@ -12,8 +12,7 @@ on:
 
 env:
   DOCKER_IMAGE_NAME: ghcr.io/loculus-project/preprocessing-nextclade
-  # BUILD_ARM: ${{ github.ref == 'refs/heads/main' || github.event.inputs.build_arm }} # Uncomment once nextclade in bioconda aarch64
-  BUILD_ARM: ${{ github.event.inputs.build_arm }}
+  BUILD_ARM: ${{ github.ref == 'refs/heads/main' || github.event.inputs.build_arm }}
 
 concurrency:
   group: ci-${{ github.ref == 'refs/heads/main' && github.run_id || github.ref }}-preprocessing-nextclade

diff --git a/preprocessing/nextclade/environment.yml b/preprocessing/nextclade/environment.yml
@@ -5,8 +5,8 @@ channels:
 dependencies:
   - python=3.12
   - biopython=1.83
-  - nextclade=3.2.1
+  - nextclade=3.3.1
   - PyYAML
   - requests=2.31
   - pyjwt=2.8
-  - pip
+  - pip