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fix(deployment): add range search to length field #1987

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merged 2 commits into from
May 21, 2024
Merged

fix(deployment): add range search to length field #1987

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a0a494a
add range search to length field
theosanderson May 21, 2024
dc59acf
add more
theosanderson May 21, 2024
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8 changes: 8 additions & 0 deletions kubernetes/loculus/values.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -343,6 +343,7 @@ defaultOrganismConfig: &defaultOrganismConfig
displayName: Host Age
type: int
header: Host
rangeSearch: true
- name: host_age_bin
ontology_id: GENEPIO:0001394
definition: The age category of the host at the time of sampling.
Expand Down Expand Up @@ -694,6 +695,7 @@ defaultOrganismConfig: &defaultOrganismConfig
type: int
header: "Alignment states and QC metrics"
noInput: true
rangeSearch: true
- name: host_name_scientific
generateIndex: true
autocomplete: true
Expand Down Expand Up @@ -768,39 +770,45 @@ defaultOrganismConfig: &defaultOrganismConfig
type: int
header: "Alignment states and QC metrics"
noInput: true
rangeSearch: true
preprocessing:
args: { type: int }
inputs: { input: nextclade.totalSubstitutions }
- name: total_inserted_nucs
type: int
header: "Alignment states and QC metrics"
noInput: true
rangeSearch: true
preprocessing:
args: { type: int }
inputs: { input: nextclade.totalInsertions }
- name: total_deleted_nucs
type: int
header: "Alignment states and QC metrics"
noInput: true
rangeSearch: true
preprocessing:
args: { type: int }
inputs: { input: nextclade.totalDeletions }
- name: total_ambiguous_nucs
type: int
header: "Alignment states and QC metrics"
noInput: true
rangeSearch: true
preprocessing:
args: { type: int }
inputs: { input: "nextclade.totalNonACGTNs" }
- name: total_unknown_nucs
type: int
header: "Alignment states and QC metrics"
noInput: true
rangeSearch: true
preprocessing:
args: { type: int }
inputs: { input: nextclade.totalMissing }
- name: total_frame_shifts
type: int
rangeSearch: true
header: "Alignment states and QC metrics"
noInput: true
preprocessing:
Expand Down
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