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feat(ingest): Update datasets package in ingest #2829

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merged 1 commit into from
Sep 18, 2024
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@anna-parker anna-parker commented Sep 18, 2024

resolves #2828

preview URL: https://fix-nci-datasets.loculus.org/

Summary

Apply error log suggestions (see below) and update the datasets package.

For best results
1. Make sure to use --as-json-lines with the datasets command
2. Make sure that you're using the latest version of the datasets command line tool

Screenshot

Sequences are showing up again for cchf and west nile:
image

@anna-parker anna-parker added the preview Triggers a deployment to argocd label Sep 18, 2024
@anna-parker anna-parker changed the title Update datasets package in ingest feat(ingest): Update datasets package in ingest Sep 18, 2024
@anna-parker anna-parker added the review please PR waiting for final review label Sep 18, 2024
@anna-parker anna-parker merged commit e0ace88 into main Sep 18, 2024
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@anna-parker anna-parker deleted the fix_nci_datasets branch September 18, 2024 09:30
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NCBI datasets error causing ingest to fail for west nile and cchf
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