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1. grabseqs grabseqs Public

   A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

   Python 105 16

2. sunbeam-labs/sunbeam sunbeam-labs/sunbeam Public

   A robust, extensible metagenomics pipeline

   Python 167 42

3. hisss hisss Public

   Snakemake workflow to download and/or align reads to targets and produce useful outputs.

   Python 4 2

4. fang-tcga fang-tcga Public

   Snakemake workflow to dump TCGA reads, map to target genomes, and summarize alignments

   Python 1

5. pyviko pyviko Public

   A web interface & Python tool to design knockouts in viruses with overlapping genes.

   HTML 3

6. komplexity komplexity Public

   A k-mer-based approach for masking low-complexity nucleotide sequences.

   Go 6 1