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v3.0.0 beta 3 release

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@taoliu taoliu released this 30 Jul 16:46
· 365 commits to master since this release
v3.0.0b3
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Learn about vigilant mode.

The third beta version of MACS3, addressing the Cython issue and adding more HMMRATAC options.

  • New features from beta2:

  1. HMMRATAC module

    --modelonly option: only generate HMM model and quit

    -t or --training: customized training regions can be provided through this option.

    --min-frag-p: exclude fragments with abnormal fragment length while generating four signal tracks. #577 Check macs3 hmmratac -h.

  2. testing for Mac OS12 is added.

  3. We require Cython 0.29.*. The new Cython3 will break our codes. We will adopt Cython3 later. #574

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