Merge pull request #176 from madeline-scyphers/develop #826
Workflow file for this run
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| name: ci | |
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - develop | |
| - main | |
| env: | |
| CACHE_NUMBER: 0 # increase to reset cache manually | |
| jobs: | |
| pre_job: | |
| runs-on: ubuntu-latest | |
| # Map a step output to a job output | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@v5 | |
| with: | |
| # All of these options are optional, so you can remove them if you are happy with the defaults | |
| concurrent_skipping: 'same_content_newer' | |
| skip_after_successful_duplicate: 'true' | |
| paths_ignore: '["**/README.md", "**/docs/**"]' | |
| do_not_skip: '["workflow_dispatch", "schedule"]' | |
| ci: | |
| needs: pre_job | |
| if: needs.pre_job.outputs.should_skip != 'true' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # # something in 0.3.7 was introduced that caused both run_n_trials and run_all_trials to not run | |
| # # the expected number of trials. Removing support for 0.3.7 and above until we can figure out what's going on | |
| # - os: ubuntu | |
| # label: linux-64-0.4.0 | |
| # prefix: /usr/share/miniconda3/envs/boa | |
| # ax_version: 0.4.0 | |
| # - os: ubuntu | |
| # label: linux-64-0.3.7 | |
| # prefix: /usr/share/miniconda3/envs/boa | |
| # ax_version: 0.3.7 | |
| - os: ubuntu | |
| label: linux-64-0.3.6 | |
| prefix: /usr/share/miniconda3/envs/boa | |
| ax_version: 0.3.6 | |
| - os: ubuntu | |
| label: linux-64-0.3.5 | |
| prefix: /usr/share/miniconda3/envs/boa | |
| ax_version: 0.3.5 | |
| - os: ubuntu | |
| label: linux-64-0.3.4 | |
| prefix: /usr/share/miniconda3/envs/boa | |
| ax_version: 0.3.4 | |
| - os: ubuntu | |
| label: linux-64-0.3.3 | |
| prefix: /usr/share/miniconda3/envs/boa | |
| ax_version: 0.3.3 | |
| - os: ubuntu | |
| label: linux-64-0.3.2 | |
| prefix: /usr/share/miniconda3/envs/boa | |
| ax_version: 0.3.2 | |
| - os: ubuntu | |
| label: linux-64-0.3.1 | |
| prefix: /usr/share/miniconda3/envs/boa | |
| ax_version: 0.3.1 | |
| - os: macos | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/boa | |
| - os: windows | |
| label: win-64 | |
| prefix: C:\Miniconda3\envs\boa | |
| name: ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }}-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| python-version: '3.11' | |
| activate-environment: boa | |
| use-mamba: true | |
| - name: Set cache date | |
| run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ matrix.prefix }} | |
| key: ${{ matrix.label }}-conda-${{ hashFiles('environment_dev.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update base environment | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: mamba env update -n boa -f environment_dev.yml | |
| - name: update ax versions | |
| if: ${{ matrix.ax_version }} # only update when ax_version is set | |
| shell: bash -l {0} | |
| run: mamba install ax-platform=${{ matrix.ax_version }} -c conda-forge | |
| - name: export env to artifact | |
| run: mamba env export -n boa > environment_ci_${{ matrix.os }}_${{ matrix.ax_version }}.yml | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: environment_ci_${{ matrix.os }}.yml | |
| path: environment_ci_${{ matrix.os }}.yml | |
| - name: Lint | |
| shell: bash -l {0} | |
| run: | | |
| invoke style --checkonly | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: invoke tests --options '-v -s --cov=boa --cov-branch --cov-report=xml' | |
| - name: Upload coverage to Codecov | |
| if: startsWith(matrix.os, 'ubuntu') | |
| uses: codecov/codecov-action@v3 | |
| - name: Pytest coverage comment | |
| if: startsWith(matrix.os, 'ubuntu') | |
| uses: MishaKav/pytest-coverage-comment@main | |
| with: | |
| pytest-xml-coverage-path: ./coverage.xml | |
| - name: Test package builds successfully | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install build | |
| python -m build | |
| # Report final results of the matrix tests | |
| result: | |
| name: Result | |
| if: needs.pre_job.outputs.should_skip != 'true' && always() | |
| runs-on: ubuntu-latest | |
| needs: | |
| - pre_job | |
| - ci | |
| steps: | |
| - name: Mark result as failed | |
| if: needs.ci.result != 'success' | |
| run: exit 1 |