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Releases: mahmoodlab/HEST

v1.2.0: add dask suppport and valis alignment (#69)

05 Nov 14:07
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  • add dask support for loading larger than RAM transcript dataframes with XeniumReader
  • refactor alignment methods (decouple alignment matrix loading from alignment)
  • add Valis registration support to the processinig pipeline
  • cleanup unused functions/imports
  • hestcore 1.0.3 -> 1.0.4 (better documentation)

v1.1.0

08 Aug 02:07
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Library release HEST v1.1.0

  • Speed up import of hest lib (5X) by removing dependencies and using conditional imports
  • Speed up deep learning based tissue segmentation by 10X
  • Easy CellViT segmentation with cellvit-light
  • Refactor tissue segmentation saving, now saving as .geojson
  • Now possible to load cellvit segmentation as .parquet (10X speedup)
  • Improve support for SpatialData (attaching cell segmentation)