Releases: mahmoodlab/HEST
Releases · mahmoodlab/HEST
v1.2.0: add dask suppport and valis alignment (#69)
- add dask support for loading larger than RAM transcript dataframes with XeniumReader
- refactor alignment methods (decouple alignment matrix loading from alignment)
- add Valis registration support to the processinig pipeline
- cleanup unused functions/imports
- hestcore 1.0.3 -> 1.0.4 (better documentation)
v1.1.0
Library release HEST v1.1.0
- Speed up import of hest lib (5X) by removing dependencies and using conditional imports
- Speed up deep learning based tissue segmentation by 10X
- Easy CellViT segmentation with cellvit-light
- Refactor tissue segmentation saving, now saving as .geojson
- Now possible to load cellvit segmentation as .parquet (10X speedup)
- Improve support for SpatialData (attaching cell segmentation)