Datasets

Dataset1 - 18 human genomes

Dataset ID	Assembly Accession	Assembly Name	Download Link
1	GCA_009914755.4	CHM13_T2T_v2.0	https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/analysis_set/chm13v2.0.fa.gz
2	GCA_000001405.28	GRCh38.p13	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.28_GRCh38.p13/GCA_000001405.28_GRCh38.p13_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
3	GCA_011064465.1	Ash1.7	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/064/465/GCA_011064465.1_Ash1.7/GCA_011064465.1_Ash1.7_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
4	GCA_002180035.3	HG00514_prelim_3.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/180/035/GCA_002180035.3_HG00514_prelim_3.0/GCA_002180035.3_HG00514_prelim_3.0_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
5	GCA_001524155.4	NA19240_prelim_3.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/524/155/GCA_001524155.4_NA19240_prelim_3.0/GCA_001524155.4_NA19240_prelim_3.0_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
6	GCA_003634875.1	HG00733_Phased_Diploid_phase0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/634/875/GCA_003634875.1_HG00733_Phased_Diploid/GCA_003634875.1_HG00733_Phased_Diploid_assembly_structure/phase0/assembled_chromosomes/FASTA/
7	GCA_014905855.1	ASM1490585v1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/905/855/GCA_014905855.1_ASM1490585v1/GCA_014905855.1_ASM1490585v1_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
8	GCA_002077035.3	NA12878_prelim_3.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/077/035/GCA_002077035.3_NA12878_prelim_3.0/GCA_002077035.3_NA12878_prelim_3.0_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
9	GCA_016700455.2	mHomSap3.pat	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/700/455/GCA_016700455.2_mHomSap3.pat/GCA_016700455.2_mHomSap3.pat_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
10	GCA_016695395.2	mHomSap3.mat	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/695/395/GCA_016695395.2_mHomSap3.mat/GCA_016695395.2_mHomSap3.mat_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
11	GCA_015476435.1	HC1-N	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/476/435/GCA_015476435.1_HC1-N/GCA_015476435.1_HC1-N_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
12	GCA_001292825.2	HS1011_v1.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/292/825/GCA_001292825.2_HS1011_v1.1/GCA_001292825.2_HS1011_v1.1_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
13	GCA_000306695.2	CHM1_1.1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/306/695/GCA_000306695.2_CHM1_1.1/GCA_000306695.2_CHM1_1.1_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
14	GCA_000002125.2	HuRef	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/125/GCA_000002125.2_HuRef/GCA_000002125.2_HuRef_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
15	GCA_000212995.1	HuRefPrime	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/212/995/GCA_000212995.1_HuRefPrime/GCA_000212995.1_HuRefPrime_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
16	GCA_003634875.1	HG00733_Phased_Diploid_phase1	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/634/875/GCA_003634875.1_HG00733_Phased_Diploid/GCA_003634875.1_HG00733_Phased_Diploid_assembly_structure/phase1/assembled_chromosomes/FASTA/
17	GCA_001712695.1	KOREF1.0	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/712/695/GCA_001712695.1_KOREF1.0/GCA_001712695.1_KOREF1.0_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/
18	GCA_000002115.2	WGSA	https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/002/115/GCA_000002115.2_WGSA/GCA_000002115.2_WGSA_assembly_structure/Primary_Assembly/assembled_chromosomes/FASTA/

Dataset2 - small genome datasets

Dataset Name	Number of Sequences	Mean Length without N	Mean Length with N	Data size/MB	Download Link
Mitochondrial-genome	672	16,568	16,568	10.6	http://lab.malab.cn/soft/halign/data/mt1x.zip
Neisseria-meningitidis	5	2,190,088	2,190,088	10.4	https://github.com/malabz/Halign-G-data/raw/main/data/Neisseria-meningitidis.zip
Streptococcus-pneumoniae	11	2,138,975	2,139,054	22.4	https://github.com/malabz/Halign-G-data/raw/main/data/Streptococcus-pneumoniae.zip
Escherichia-coil	30	5,060,511	5,060,749	144.8	https://github.com/malabz/Halign-G-data/raw/main/data/Escherichia-coil.zip.001 https://github.com/malabz/Halign-G-data/raw/main/data/Escherichia-coil.zip.002
3Human-chromosome-1	3	231,424,778	231,424,778	662.1	https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.001 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.002 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.003 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.004 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.005 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.006 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.007 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.008 https://github.com/malabz/Halign-G-data/raw/main/data/3-Human-chromosome-1.zip.009