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diff --git a/_sources/pf7/evolution-malaria-control.md b/_sources/pf7/evolution-malaria-control.md
@@ -1,4 +1,4 @@
-# **Pf7 Analysis Guides*:**Study Evolution Against Malaria Control Measures
+# **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
 
 The notebooks below walk through the analysis of evolution against malaria control measures in Pf7 samples.  Current topics include resistance to antimalarial drugs and genetic variation in genes linked to rapid diagnostic test failure (*hrp2* and *hrp3*) and vaccine escape (*csp*). 
 

diff --git a/_sources/pf7/popgen.md b/_sources/pf7/popgen.md
@@ -1,4 +1,4 @@
-# **Pf7 Analysis Guides*:** Population Structure and Selection 
+# **Pf7 Analysis Guides:** Population Structure and Selection 
 
 The notebooks below cover the population genetic analysis of Pf7 samples. You can run analyses of population structure (PCoA, NJT) or look at selection in the gene *eba175*, for example.  
 

diff --git a/_sources/pf7/summarise-data.md b/_sources/pf7/summarise-data.md
@@ -1,4 +1,4 @@
-# **Pf7 Analysis Guides*:** Summarise Pf7 Data
+# **Pf7 Analysis Guides:** Summarise Pf7 Data
 
 The notebooks below provide guides to summarising data from the Pf7 data release. 
 

diff --git a/_sources/pf7/useful-how-tos.md b/_sources/pf7/useful-how-tos.md
@@ -1,4 +1,4 @@
-# **Pf7 Analysis Guides*:** Useful Genomics How-Tos
+# **Pf7 Analysis Guides:** Useful Genomics How-Tos
 
 These notebooks cover different techniques for the genomic analysis of Pf7 data, which are not explicitly linked to a display item from the [Pf7 paper.](https://wellcomeopenresearch.org/articles/8-22/v1)
 

diff --git a/_static/__pycache__/__init__.cpython-38.pyc b/_static/__pycache__/__init__.cpython-38.pyc
diff --git a/genindex.html b/genindex.html
@@ -100,13 +100,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/useful-how-tos.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Useful Genomics How-Tos
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Useful Genomics How-Tos
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/>
   <label for="toctree-checkbox-1">
@@ -123,13 +120,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/summarise-data.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Summarise Pf7 Data
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Summarise Pf7 Data
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/>
   <label for="toctree-checkbox-2">
@@ -166,11 +160,7 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/evolution-malaria-control.html">
-   *
-   <em>
-    Pf7 Analysis Guides
-   </em>
-   :**Study Evolution Against Malaria Control Measures
+   **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" type="checkbox"/>
   <label for="toctree-checkbox-3">
@@ -223,13 +213,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/popgen.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Population Structure and Selection
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Population Structure and Selection
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" type="checkbox"/>
   <label for="toctree-checkbox-4">

diff --git a/landing-page.html b/landing-page.html
@@ -108,13 +108,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/useful-how-tos.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Useful Genomics How-Tos
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Useful Genomics How-Tos
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/>
   <label for="toctree-checkbox-1">
@@ -131,13 +128,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/summarise-data.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Summarise Pf7 Data
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Summarise Pf7 Data
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/>
   <label for="toctree-checkbox-2">
@@ -174,11 +168,7 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/evolution-malaria-control.html">
-   *
-   <em>
-    Pf7 Analysis Guides
-   </em>
-   :**Study Evolution Against Malaria Control Measures
+   **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" type="checkbox"/>
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@@ -231,13 +221,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="pf7/popgen.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Population Structure and Selection
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Population Structure and Selection
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" type="checkbox"/>
   <label for="toctree-checkbox-4">
@@ -400,27 +387,27 @@ <h1>MalariaGEN parasite data user guide<a class="headerlink" href="#malariagen-p
 <p class="caption"><span class="caption-text">Pf7</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="pf7/Data_access.html">Pf7 Data Access</a></li>
-<li class="toctree-l1"><a class="reference internal" href="pf7/useful-how-tos.html"><em><em>Pf7 Analysis Guides</em>:</em>* Useful Genomics How-Tos</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="pf7/useful-how-tos.html"><strong>Pf7 Analysis Guides:</strong> Useful Genomics How-Tos</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="pf7/useful_how_tos/igv-notebook.html">Visualizing Genomic Regions of Pf7 Samples with IGV Plots</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="pf7/summarise-data.html"><em><em>Pf7 Analysis Guides</em>:</em>* Summarise Pf7 Data</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="pf7/summarise-data.html"><strong>Pf7 Analysis Guides:</strong> Summarise Pf7 Data</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="pf7/summarise_data/sample-summary-table.html">Summarise Samples by Administrative Division</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/summarise_data/sample-collection-over-time.html">Visualising sample collections over time</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/summarise_data/barplot-samples-by-country.html">Barplot of Samples by Country</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/summarise_data/variant-summary-table.html">Summarise Genetic Variants</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/summarise_data/global-sample-map.html">Plot Global Map of Samples</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="pf7/evolution-malaria-control.html">*<em>Pf7 Analysis Guides</em>:**Study Evolution Against Malaria Control Measures</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="pf7/evolution-malaria-control.html">**Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="pf7/evolution_malaria_control/drug-resistance-summary.html">Drug Resistance Frequencies Across Pf7</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/evolution_malaria_control/chloroquine-resistance-map.html">Plot Map of Chloroquine Resistance</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/evolution_malaria_control/summarise_hrp2_hrp3_deletions.html">Summarise <em>hrp2</em> and <em>hrp3</em> Deletions</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/evolution_malaria_control/visualise_hrp2_hrp3_deletions.html">Visualise <em>hrp2</em> and <em>hrp3</em> Deletions</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/evolution_malaria_control/csp-cterm-analysis.html">Analyse csp C-Terminal Variation</a></li>
 </ul>
 </li>
-<li class="toctree-l1"><a class="reference internal" href="pf7/popgen.html"><em><em>Pf7 Analysis Guides</em>:</em>* Population Structure and Selection</a><ul>
+<li class="toctree-l1"><a class="reference internal" href="pf7/popgen.html"><strong>Pf7 Analysis Guides:</strong> Population Structure and Selection</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="pf7/popgen/PCoA.html">Principal Coordinate Analysis</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/popgen/geographic-genetic-differentiation.html">Geographic patterns of population differentiation and gene flow</a></li>
 <li class="toctree-l2"><a class="reference internal" href="pf7/popgen/neighbour-joining-tree-swga.html">Neighbour Joining Tree for sWGA vs. gDNA</a></li>

diff --git a/objects.inv b/objects.inv
diff --git a/pf7/Data_access.html b/pf7/Data_access.html
@@ -51,7 +51,7 @@
     <script async="async" src="../_static/sphinx-thebe.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Pf7 Analysis Guides:* Useful Genomics How-Tos" href="useful-how-tos.html" />
+    <link rel="next" title="Pf7 Analysis Guides: Useful Genomics How-Tos" href="useful-how-tos.html" />
     <link rel="prev" title="MalariaGEN parasite data user guide" href="../landing-page.html" />
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     <meta name="docsearch:language" content="None">
@@ -109,13 +109,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="useful-how-tos.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Useful Genomics How-Tos
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Useful Genomics How-Tos
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/>
   <label for="toctree-checkbox-1">
@@ -132,13 +129,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="summarise-data.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Summarise Pf7 Data
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Summarise Pf7 Data
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" type="checkbox"/>
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  </li>
  <li class="toctree-l1 has-children">
   <a class="reference internal" href="evolution-malaria-control.html">
-   *
-   <em>
-    Pf7 Analysis Guides
-   </em>
-   :**Study Evolution Against Malaria Control Measures
+   **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
   </a>
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   <a class="reference internal" href="popgen.html">
-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Population Structure and Selection
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Population Structure and Selection
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" type="checkbox"/>
   <label for="toctree-checkbox-4">
@@ -11391,7 +11378,7 @@ <h2>Genome Reference<a class="headerlink" href="#genome-reference" title="Permal
     <a class='right-next' id="next-link" href="useful-how-tos.html" title="next page">
     <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title"><em><em>Pf7 Analysis Guides</em>:</em>* Useful Genomics How-Tos</p>
+        <p class="prev-next-title"><strong>Pf7 Analysis Guides:</strong> Useful Genomics How-Tos</p>
     </div>
     <i class="fas fa-angle-right"></i>
     </a>

diff --git a/pf7/api.html b/pf7/api.html
@@ -109,13 +109,10 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
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-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Useful Genomics How-Tos
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Useful Genomics How-Tos
   </a>
   <input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" type="checkbox"/>
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-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Summarise Pf7 Data
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Summarise Pf7 Data
   </a>
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-   *
-   <em>
-    Pf7 Analysis Guides
-   </em>
-   :**Study Evolution Against Malaria Control Measures
+   **Pf7 Analysis Guides:**Study Evolution Against Malaria Control Measures
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-   <em>
-    <em>
-     Pf7 Analysis Guides
-    </em>
-    :
-   </em>
-   * Population Structure and Selection
+   <strong>
+    Pf7 Analysis Guides:
+   </strong>
+   Population Structure and Selection
   </a>
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