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malariagen · Feb 12, 2024 · cf17876 · cf17876
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diff --git a/_sources/pv4/Data_access.ipynb b/_sources/pv4/Data_access.ipynb
@@ -7,7 +7,7 @@
     "id": "0238fdea"
    },
    "source": [
-    "# Pv4 Data Access\n",
+    "# **Pv4 Data Access**\n",
     "\n",
     "This page provides information about how to access data from [Plasmodium vivax version 4 (Pv4)](https://www.malariagen.net/resource/30) project via Google Cloud. This includes sample metadata and single nucleotide polymorphism (SNP) calls for 1,895 samples from 27 countries. This release spans [11 partner studies and 3 external studies](https://www.malariagen.net/sites/default/files/Pv4%20contributing%20partner%20studies.pdf).\n",
     "\n",

diff --git a/_sources/pv4/api.md b/_sources/pv4/api.md
@@ -1,4 +1,4 @@
-# Pv4 API
+# **Pv4 API**
 
 This page provides documentation for functions in the [malariagen_data](https://github.com/malariagen/malariagen-data-python) Python package for accessing _Plasmodium falciparum_ data.
 

diff --git a/_static/__pycache__/__init__.cpython-38.pyc b/_static/__pycache__/__init__.cpython-38.pyc
diff --git a/genindex.html b/genindex.html
@@ -271,12 +271,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/landing-page.html b/landing-page.html
@@ -279,12 +279,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>
@@ -427,8 +431,8 @@ <h1>MalariaGEN parasite data user guide<a class="headerlink" href="#malariagen-p
 <div class="toctree-wrapper compound">
 <p class="caption"><span class="caption-text">Pv4</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="pv4/Data_access.html">Pv4 Data Access</a></li>
-<li class="toctree-l1"><a class="reference internal" href="pv4/api.html">Pv4 API</a></li>
+<li class="toctree-l1"><a class="reference internal" href="pv4/Data_access.html"><strong>Pv4 Data Access</strong></a></li>
+<li class="toctree-l1"><a class="reference internal" href="pv4/api.html"><strong>Pv4 API</strong></a></li>
 </ul>
 </div>
 <hr class="docutils" />

diff --git a/pf7/Data_access.html b/pf7/Data_access.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/api.html b/pf7/api.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>
@@ -626,7 +630,7 @@ <h2>variant_calls()<a class="headerlink" href="#variant-calls" title="Permalink
     <a class='right-next' id="next-link" href="../pv4/Data_access.html" title="next page">
     <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Pv4 Data Access</p>
+        <p class="prev-next-title"><strong>Pv4 Data Access</strong></p>
     </div>
     <i class="fas fa-angle-right"></i>
     </a>

diff --git a/pf7/evolution-malaria-control.html b/pf7/evolution-malaria-control.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/evolution_malaria_control/chloroquine-resistance-map.html b/pf7/evolution_malaria_control/chloroquine-resistance-map.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/evolution_malaria_control/csp-cterm-analysis.html b/pf7/evolution_malaria_control/csp-cterm-analysis.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/evolution_malaria_control/drug-resistance-summary.html b/pf7/evolution_malaria_control/drug-resistance-summary.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/evolution_malaria_control/summarise_hrp2_hrp3_deletions.html b/pf7/evolution_malaria_control/summarise_hrp2_hrp3_deletions.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/evolution_malaria_control/visualise_hrp2_hrp3_deletions.html b/pf7/evolution_malaria_control/visualise_hrp2_hrp3_deletions.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/popgen.html b/pf7/popgen.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/popgen/PCoA.html b/pf7/popgen/PCoA.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/popgen/geographic-genetic-differentiation.html b/pf7/popgen/geographic-genetic-differentiation.html
@@ -282,12 +282,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/popgen/neighbour-joining-tree-swga.html b/pf7/popgen/neighbour-joining-tree-swga.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/popgen/proportion-eba175.html b/pf7/popgen/proportion-eba175.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/summarise-data.html b/pf7/summarise-data.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/summarise_data/barplot-samples-by-country.html b/pf7/summarise_data/barplot-samples-by-country.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
 <ul class="nav bd-sidenav">
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
  </li>
  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/summarise_data/global-sample-map.html b/pf7/summarise_data/global-sample-map.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
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  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
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  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/api.html">
-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>

diff --git a/pf7/summarise_data/sample-collection-over-time.html b/pf7/summarise_data/sample-collection-over-time.html
@@ -280,12 +280,16 @@ <h1 class="site-logo" id="site-title">MalariaGEN parasite data user guide</h1>
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  <li class="toctree-l1">
   <a class="reference internal" href="../../pv4/Data_access.html">
-   Pv4 Data Access
+   <strong>
+    Pv4 Data Access
+   </strong>
   </a>
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  <li class="toctree-l1">
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-   Pv4 API
+   <strong>
+    Pv4 API
+   </strong>
   </a>
  </li>
 </ul>