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  1. model_reduction model_reduction Public

    Matlab implementation of automated model reduction of biochemical reaction networks

    MATLAB 2

  2. parameter_estimation_reaction_rates parameter_estimation_reaction_rates Public

    Matlab implementation of automated parameter estimation method for chemical reaction networks from observed time-series experimental data of reaction rates

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  3. settling_time settling_time Public

    This repository is used to determine the settling time of a given biochemical reaction network using the approach described in the manuscript "An Automated Model Reduction Method for Biochemical Re…

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  4. microplastics_surface_area microplastics_surface_area Public

    Matlab implementation of the process of calculating the available surface for interaction on microplastic beads of different size and shape

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  5. parameter_estimation_concentrations parameter_estimation_concentrations Public

    Parameter estimation for models of chemical reaction networks from partial experimental data of species' concentrations

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  6. Kron_red_DGF_decomp Kron_red_DGF_decomp Public

    Python package for performing Kron reduction on chemical reaction networks, described by species-reaction graphs and modeled using a new Laplacian formulation.

    Python