Fix github actions #1260
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| branches: | |
| - '*' | |
| schedule: | |
| - cron: '0 0 * * *' # Daily “At 00:00” | |
| workflow_dispatch: # allows you to trigger manually | |
| jobs: | |
| build: | |
| name: Build (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set environment variables | |
| run: | | |
| if [[ ${{ matrix.os }} == windows* ]] ; | |
| then | |
| echo "CONDA_ENV_FILE=ci/environment-windows.yml" >> $GITHUB_ENV | |
| else | |
| echo "CONDA_ENV_FILE=ci/environment.yml" >> $GITHUB_ENV | |
| fi | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Set up conda environment with micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: ci/environment.yml | |
| environment-name: dev-feisty | |
| create-args: python=${{ matrix.python-version }} | |
| - name: Use old versions of packages where conda is out of sync with version support | |
| run: | | |
| if [[ ${{ matrix.python-version }} == 3.7 ]] ; | |
| then | |
| echo "Need to use older versions of zipp and zarr" | |
| micromamba install zarr=2.14.2 zipp=3.15.0 | |
| else | |
| echo "Not modifying conda environment" | |
| fi | |
| - name: Show conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| build-docs: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # Install dependencies | |
| - name: Set up conda environment with micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: ci/environment.yml | |
| environment-name: dev-feisty | |
| create-args: python=3.11 | |
| - name: Show conda environment | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| # Build the book | |
| - name: Build the book | |
| run: | | |
| jupyter-book build docs/ --all |