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Jérémy Martin
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# Section information | ||
section: | ||
name: Skills | ||
id: skills | ||
enable: true | ||
weight: 2 | ||
showOnNavbar: true | ||
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# Your skills | ||
skills: | ||
- name: R / RMarkdown | ||
logo: images/sections/skills/Rmd.png | ||
summary: "Utilisation en routine dans un contexte académique. Automatisation de l'édition de rapport RMarkdown. **Libraries communement utilisées :** _Tidyverse, Seurat, Monocle, DESeq2, Limma, Bioconductor environment_." | ||
url: "https://www.r-project.org/" | ||
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- name: RShiny | ||
logo: images/sections/skills/RShiny.png | ||
summary: "Construction de Dashboard pour présenter les données et les conclustions avec le framework RShiny. Construction d'une application Web pour permettre l'exploration de donnée scRNA-seq par les biologistes. **Librairies communement utilisées :** _Shiny, ShinyBS, ShinyDashboard, plotly, ShinyJS_." | ||
url: "https://shiny.rstudio.com/" | ||
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- name: Python | ||
logo: images/sections/skills/python.png | ||
summary: "Prise en charge des data et preuve de concept de l'IA appliquée à la biology. Initiation aux interfaces graphiques avec Qt pour Python. **Libraries communement utilisées :** _Num/SciPy, Pandas, Keras, Scikit-Learn, Plotly_." | ||
url: "https://www.python.org/psf/" | ||
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- name: Snakemake | ||
logo: images/sections/skills/Snakemake.png | ||
summary: "Workflow manager utilisé pour automatiser de manière reproductible le pipeline d'analyse. Snakemake a été développé pour réaliser des traitements RNA-seq en masse et des traitements Hi-C." | ||
url: "https://snakemake.readthedocs.io/en/stable/" | ||
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- name: Linux | ||
logo: images/sections/skills/Linux.png | ||
summary: "Utilisation comme système d'exploitation principal. Capable d'écrire des scripts bash/shell. Polyvalence avec un émulateur de terminal. Familiarisé avec les clusters HPC SLURM ([GenoToul](http://bioinfo.genotoul.fr/))." | ||
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- name: Git | ||
logo: images/sections/skills/Git.png | ||
summary: "Expérimenté avec le développement basé sur git. J'utilise principalement GitHub sur mon compte personnel et sur le compte de mon organisation. J'ai également de l'expérience dans l'utilisation de GitLab." | ||
url: "https://git-scm.com" | ||
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- name: Alphafold | ||
logo: images/sections/skills/Deepmind.png | ||
summary: "Démarrage avec Alphafold et Alphafold-multimer. Visualisation des données et manipulation des modèles avec ChimeraX de l'UCSC." | ||
url: "https://github.com/deepmind/alphafold" | ||
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- name: ISTQB | ||
logo: images/sections/skills/istqb.png | ||
summary: "ISTQB Foundation (v4) certified." | ||
url: "https://istqb.org" | ||
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# - name: Cluster Computing | ||
# logo: images/sections/skills/ | ||
# summary: | ||
# url: |