- University of Michigan
- https://marvinquiet.github.io/
- @marvinquiet
Highlights
- Pro
Stars
Deep universal probabilistic programming with Python and PyTorch
scTM: A package for topic modelling in transcriptomics data
RNA Velocity generalized through dynamical modeling
Code and Simulations using Bayesian Approximate Kernel Regression (BAKR)
This is a curated list of sources related to Gaussian Process, including papers, discussions, implementations and applications.
Python notebooks for Optimal Transport between Gaussian Mixture Models
Spatiotemporal modeling of spatial transcriptomics
R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data
A Python/R package for fitting linear mixed models for genome-wide association studies among related individuals
Dependency-aware deep generative models for multitasking analysis of spatial genomics data
Probabilistic Alignment of Spatial Transcriptomics Experiments
Methods and Implements of Deep Clustering
CeLEry: cell location recovery in single-cell RNA sequencing
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framework)
zhanglabtools / STAGATE
Forked from QIFEIDKN/STAGATEAdaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
repository for Universal Domain Adaptation through Self-supervision
GDA-AM solves a wide range of minimax problems
Image-to-Image Translation in PyTorch
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.