CreateConflictTagSet: use better color map

src/main/java/org/mastodon/mamut/tomancak/lineage_registration/Glasbey.java

@@ -6,13 +6,13 @@
  * %%
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
- * 
+ *
  * 1. Redistributions of source code must retain the above copyright notice,
  *    this list of conditions and the following disclaimer.
  * 2. Redistributions in binary form must reproduce the above copyright notice,
  *    this list of conditions and the following disclaimer in the documentation
  *    and/or other materials provided with the distribution.
- * 
+ *
  * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
  * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
  * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
@@ -35,6 +35,13 @@
  */
 public class Glasbey
 {
+	/**
+	 * Fiji's Glasbey LUT. (Glasbey on white background)
+	 * <p>
+	 * The color with index 0 is white. It is my impression that the
+	 * first 5 colors (white, blue, gree, red, very dark blue) don't really
+	 * fit well with the rest of the set.
+	 */
 	public static final int[] GLASBEY = { 0xffffffff, 0xff0000ff, 0xffff0000, 0xff00ff00, 0xff000033, 0xffff00b6, 0xff005300, 0xffffd300,
 			0xff009fff, 0xff9a4d42, 0xff00ffbe, 0xff783fc1, 0xff1f9698, 0xffffacfd, 0xffb1cc71, 0xfff1085c, 0xfffe8f42, 0xffdd00ff,
 			0xff201a01, 0xff720055, 0xff766c95, 0xff02ad24, 0xffc8ff00, 0xff886c00, 0xffffb79f, 0xff858567, 0xffa10300, 0xff14f9ff,
@@ -62,6 +69,11 @@ public class Glasbey
 			0xff436d12, 0xffeaaaad, 0xffbfa500, 0xff262c33, 0xff55b902, 0xff79b69e, 0xfffeecd4, 0xff8ba559, 0xff8dfec1, 0xff003c2b,
 			0xff3f1128, 0xffffddf6, 0xff111a92, 0xff9a4254, 0xff959dee, 0xff7e8248, 0xff3a0665, 0xffbd7565 };
 
+	/**
+	 * Fiji's Glasbey LUT on a dark background.
+	 * <p>
+	 * The color with index 0 is black.
+	 */
 	public static final int[] GLASBEY_ON_DARK = { 0xff000000, 0xffffff00, 0xffff19ff, 0xff009393, 0xff9c4000, 0xff5800c7, 0xfff1ebff,
 			0xff144b00, 0xff00bc01, 0xffff9f62, 0xff9190ff, 0xff5d003f, 0xff00ffd6, 0xffff005f, 0xff786477, 0xff004960, 0xff8c884a,
 			0xff52cfff, 0xffcf98ba, 0xff9d00b1, 0xffbfd398, 0xff006bd2, 0xffa3335b, 0xff58462b, 0xff6bff66, 0xff9cabae, 0xff008441,
@@ -88,4 +100,37 @@ public class Glasbey
 			0xffb0586c, 0xff6672b0, 0xffd8de78, 0xffbf8195, 0xffb0b2a6, 0xff7fbeff, 0xff730075, 0xff003c9e, 0xffe5dcd6, 0xff6443c3,
 			0xff71c841, 0xff4a00fa, 0xff00dc9d, 0xffebf9fe, 0xffaab102, 0xffc7aece, 0xff834a1d, 0xffff68ed, 0xff00b59e, 0xff744d67,
 			0xffab8306, 0xffda5a41, 0xffadc5cb, 0xff405500, 0xffffc284, 0xffdc1b44, 0xffa883d1, 0xff7d7983, 0xff116552 };
+
+	/**
+	 * A Glasbey color table with only light colors. It is taken from "colorcet", in the python package the color table is called
+	 * "glasbey_light".
+	 *
+	 * @See <a href="https://colorcet.holoviz.org/user_guide/Categorical.html">https://colorcet.holoviz.org/user_guide/Categorical.html</a>
+	 */
+	public static final int[] GLASBEY_LIGHT = { 0xff000000, 0xffd60000, 0xff018700, 0xffb500ff, 0xff05acc6, 0xff97ff00, 0xffffa52f,
+			0xffff8ec8, 0xff79525e, 0xff00fdcf, 0xffafa5ff, 0xff93ac83, 0xff9a6900, 0xff366962, 0xffd3008c, 0xfffdf490, 0xffc86e66,
+			0xff9ee2ff, 0xff00c846, 0xffa877ac, 0xffb8ba01, 0xfff4bfb1, 0xffff28fd, 0xfff2cdff, 0xff009e7c, 0xffff6200, 0xff56642a,
+			0xff953f1f, 0xff90318e, 0xffff3464, 0xffa0e491, 0xff8c9ab1, 0xff829026, 0xffae083f, 0xff77c6ba, 0xffbc9157, 0xffe48eff,
+			0xff72b8ff, 0xffc6a5c1, 0xffff9070, 0xffd3c37c, 0xffbceddb, 0xff6b8567, 0xff916e56, 0xfff9ff00, 0xffbac1df, 0xffac567c,
+			0xffffcd03, 0xffff49b1, 0xffc15603, 0xff5d8c90, 0xffc144bc, 0xff00753f, 0xffba6efd, 0xff00d493, 0xff00ff75, 0xff49a150,
+			0xffcc9790, 0xff00ebed, 0xffdb7e01, 0xfff77589, 0xffb89500, 0xffc84248, 0xff00cff9, 0xff755726, 0xff85d401, 0xffebffd4,
+			0xffa77b87, 0xffdb72c8, 0xffcae256, 0xff8abf5d, 0xffa1216b, 0xff855b89, 0xff89bacf, 0xffffbad6, 0xffb6cfaa, 0xff97414d,
+			0xff67aa00, 0xfffde1b1, 0xffff3628, 0xff80793d, 0xffd6e8ff, 0xffa795c6, 0xff7ea59a, 0xffd182a3, 0xff54823b, 0xffe6a872,
+			0xff9cffff, 0xffda5480, 0xff05b3aa, 0xffffaaf6, 0xffd1afef, 0xffda015d, 0xffac1a13, 0xff60b385, 0xffd442fd, 0xffacaa59,
+			0xfffb9ca7, 0xffb3723b, 0xfff26952, 0xffaed1d4, 0xff9affc3, 0xffdbb333, 0xffeb01c3, 0xff9900c4, 0xffcfff9e, 0xffa55949,
+			0xff3b6d01, 0xff008579, 0xff959167, 0xff89dbb3, 0xff6d7400, 0xffaa5dca, 0xff07ef00, 0xff804f3d, 0xffd88052, 0xffffc862,
+			0xffb8009e, 0xff99acdd, 0xff904f00, 0xff8c4470, 0xff4f6e52, 0xffff8734, 0xffc68ecd, 0xffd4e29e, 0xffb1826d, 0xff9cfb75,
+			0xff56dd77, 0xfff90087, 0xffa1cdff, 0xff13cad1, 0xff118e54, 0xffd154a5, 0xff00dfc3, 0xffa3832f, 0xff77975b, 0xffbaaa80,
+			0xff70a3af, 0xffd6fbff, 0xffe8013a, 0xffd84621, 0xffff82ed, 0xffb63862, 0xffb6cd72, 0xff97626b, 0xff897490, 0xff00a316,
+			0xff00f4a1, 0xffbf90f2, 0xff89e4d8, 0xffa34d95, 0xff6e5d00, 0xff8cc68e, 0xff95aa2a, 0xffc672dd, 0xffb33b01, 0xffd69a36,
+			0xffdfacb6, 0xff009aa0, 0xff599000, 0xff97bca8, 0xffac8ca8, 0xffdad4ff, 0xff547c72, 0xff00ba69, 0xffffc38e, 0xffb800d4,
+			0xffdfcf5b, 0xff629a7b, 0xffbfedbc, 0xffc1bdfd, 0xff80d3dd, 0xffe2857e, 0xfff9eb4d, 0xffbf6d82, 0xffcaff4f, 0xffef72aa,
+			0xffed67ff, 0xff9946ae, 0xff6d6942, 0xffe25660, 0xffdd662d, 0xff9cdb5d, 0xffe29ccf, 0xffb87500, 0xffc6002d, 0xffdfbcda,
+			0xff59b5df, 0xffff59da, 0xff38c1a1, 0xff9e698c, 0xffacaac8, 0xff95622f, 0xffb55662, 0xff2b7e60, 0xffb1e400, 0xffeda590,
+			0xff95fde2, 0xffff548e, 0xffbd6ea1, 0xffaa3b36, 0xffd8cf00, 0xffaa80cd, 0xffa08052, 0xffe100e8, 0xffc35b3d, 0xffb53a85,
+			0xff8c7700, 0xffdbbc95, 0xff529e93, 0xffafbc82, 0xff91b5b6, 0xffa75423, 0xffffd4ef, 0xff79ae6b, 0xff5db54b, 0xff80fb9a,
+			0xff48ffef, 0xff979548, 0xff9387a7, 0xff31d400, 0xff6ee956, 0xffb6d4eb, 0xff705470, 0xfff2db8a, 0xffaad4c1, 0xff7ecdf2,
+			0xff89ba00, 0xff64b6ba, 0xffffb500, 0xffc38285, 0xffcaaa5e, 0xff647748, 0xff59e2ff, 0xffdf4dcd, 0xffe9ff79, 0xffbc66b8,
+			0xffc395a5, 0xff64c674, 0xffd19570, 0xff70cf4f, 0xffaa6e66, 0xff9c60a5, 0xff00b800, 0xffe299b3, 0xffbc006b, 0xffb3e8ef,
+			0xffcdbfe4, 0xff77a342, 0xff856277, 0xff568e5b, 0xff9eafc4, 0xffe82fa0, 0xff247c2a, 0xff826723, 0xffbfbc4d, 0xffddd3a5 };
 }

src/main/java/org/mastodon/mamut/tomancak/resolve/CreateConflictTagSet.java

@@ -140,7 +140,7 @@ static String getLetters( int index )
 	 */
 	private static int getColor( final int index )
 	{
-		return Glasbey.GLASBEY[ index % 251 + 5 ];
+		return Glasbey.GLASBEY_LIGHT[ index % ( Glasbey.GLASBEY_LIGHT.length - 1 ) + 1 ];
 	}
 
 	private static RefIntMap< Spot > getBranchIdMap( final Model model )