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Add section on fuse selected spots to README.md
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stefanhahmann committed Dec 13, 2024
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Expand Up @@ -202,6 +202,33 @@ place.

#### Fuse selected spots

* Menu Location: `Plugins > Trees management > Conflict resolution > Fuse selected spots`
* The currently selected spots are fused into a single track. For each time point, the position and covariance of the
selected spots are averaged and assigned to a fused spot.
* The selected spots must fulfill very specific requirements. As shown here:

<pre>
before: after fusion:
(selected spots are marked with *)

A1 B1 C1 A1 B1 C1
| | | \ | /
A2* B2* C2* A2
| | | ---&gt; |
A3* B3* C3* A3
| | | / | \
A4 B4 C4 A4 B4 C4
</pre>

* The selected spots must belong to a fixed number of branches. And in each branch, the same number of spots must be
selected and the spots must be at the same time points.
* One of the branches is considered to be the "focused" branch. (If a spot is focused that containing branch will be
that "focused" branch.) The spots in the focused branch are kept. Their position and covariance are updated to the
average of the selected spots of the same time point. The other selected spots, that are not in the "focused" branch,
are removed.
* New edges are added as if the spots were actually fused.
* Example: ![fuse_selected_spots.gif](doc/treesmanagement/fuse_selected_spots.gif)

### Sort track scheme

#### Sort lineage tree (left-right-landmarks)
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Binary file added doc/treesmanagement/fuse_selected_spots.gif
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