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Google colab notebooks for typical MD trajectory analysis routines with Python

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Google colab notebooks for typical MD trajectory analysis routines with Python

まずはMDデータ解析の雰囲気を知るためにスパコンコロキウムの第4回の動画を視聴してから取り組んでください。

このチュートリアルを独習したい場合は、過去のセミナーの動画(研究室内限定の公開)を視聴しながら学習してください。

00 Preprocess

Open In Colab

01 MDTraj basics

Open In Colab

02 MDTraj atom selection

Open In Colab

03 Geometry analysis

Open In Colab

04 Superpose of trajectories

Open In Colab

05 Dimensional reduction

Open In Colab

06 Clustering (on-going...)

07 Hydrogen bonds (on-going...)

08 Free energy analysis (on-going...)

09 Markov state modeling (on-going...)

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Google colab notebooks for typical MD trajectory analysis routines with Python

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