Professional Portfolio
Welcome to my professional portfolio. Although this portfolio is fundamentally for me to track my own professional and life development, I hope to have something valuable that I can share.
- Curriculum Vitae
- Public Profile
- Refereed Publications and Technical Reports
- Abstracts and Other Un-Refereed Works
- Self-Evaluation on Mastery Rubrics for Bioinformatics (Tractenberg et al., 2019)
- Statement of Research Interests
- Theme 1: How Life Works - The Rules of Biological Life on Earth
- Theme 2: How Life Can Be - The Alternate World of Artificial Lives and Intelligences
- Theme 3: Computational and Statistical Tools for Research
- Annotated Publications
- Tools: AdvanceSyn Toolkit
- Tools: Agent Panel On-Demand (APOD)
- Tools: Collection of Python Algorithms and Data Structures (COPADS)
- Tools: Cyber Laboratory Notebook for Biologists and Bioinformaticists (CyNote)
- Tools: Digital Organisms Simulation Environment (DOSE)
- Tools: Hypergraph Database Management System (HygDAS)
- Tools: Mining Biomedical Literature for Molecular Interactions (Muscorian)
- Tools: Secured Recorder Box (SEREBO)
- Tools: Statistics in Python (SiPy)
- Tools: A Toolbox for Studying Bacteria, Archaea, and Complex Taxons (Bactome)
- Repository: Repository of Whole Cell Kinetic Models (KinModRe)
- Theme 4: Portraits of Science and Education
- Returns on Grants: Benchmark of Personal R&D Output