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Update setting_up.rst
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thomasmanke authored Apr 25, 2019
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Expand Up @@ -53,6 +53,16 @@ Instead of providing the URL to ``pip``, you can also `clone <https://help.githu

.. note:: Using the --user argument would install the program into ``~/.local/bin/``. So make sure to have it in your $PATH before executing any workflow.

Next, activate snakePipes.


Activate snakePipes
---------------------
.. code:: bash
conda activate snakePipes
Snakemake and pandas are installed as requirements. Ensure you have everything working by testing these commands:

.. code-block:: bash
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