1.2.1
- Fixed a typo in createIndices.
- Implemented complex experimental design in RNAseq (differential gene expression), ChIP/ATACseq (differential binding).
- Fixed an issue with ggplot2 and log transformation in RNAseq report Rmd.
- fastqc folder is created and its content will be added to multiqc only if fastqc flag is called.
- fastqc-trimmed folder is created and its content will be added to multiqc only if both fastqc and trim flags are called