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Release_1.2.3

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@katsikora katsikora released this 09 Aug 07:47
  • Updated citation for snakePipes
  • Fixed replicate check for samples with trailing spaces in names
  • Fixed input filtering in CSAW
  • Several allele-specific RNAseq fixes
  • ATACseq peakQC is now run on fragment-size filtered bam
  • Fixed Salmon output (Number of Reads output in "*counts.tsv" files and file naming)
  • Fixed CSAW QC plot error with single end reads
  • Updated histone HMM environment to a working conda version
  • Salmon_wasabi is now a localrule