Skip to content

1.3.0
Compare
Choose a tag to compare
@dpryan79 dpryan79 released this 07 Oct 11:26
· 1936 commits to master since this release
1.3.0
5b01b1f
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
  • Overhauled WGBS pipeline
  • Standardized options to be camelCase
  • Further standardized options between pipelines
  • UMI handling is now available in most pipelines
  • The --fromBAM option is now available and documented
  • Users can now change the read number indicator ("_R1" and "_R2" by default) as well as the fastq file extension on the command line.
  • Added the preprocessing pipeline, prevented python packages in users' home directories from inadvertently being used.
  • Added a snakePipes config command that can be used in lieu of editing defaults.yaml
Assets 2
Loading