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Release_2.0.0

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@katsikora katsikora released this 02 Mar 09:52
· 1599 commits to master since this release
fd1d162
  • RNAseq workflow is now called mRNA-seq
  • added noncoding-RNA-seq workflow
  • added STARsolo mode to scRNA-seq workflow (now default)
  • added peak callers to ChIP-seq (Genrich) and ATAC-seq (Genrich and HMMRATAC) workflows
  • added results with apeglm-shrunken log2 fold changes to DESeq2 output
  • multiple fixes in ATAC-seq, ChIP-seq, RNA-seq, preprocessing and createIndices workflows