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Merged
MBARIMike merged 1 commit into from
Dec 20, 2025
Merged

Check that profile_bottoms has data. #106

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4 changes: 3 additions & 1 deletion .vscode/launch.json
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Original file line number Diff line number Diff line change
Expand Up @@ -348,7 +348,9 @@
// File "/src/data/calibrate.py", line 698, in global_metadata f"{self.nudge_total_minutes:.1f} minutes nudged toward GPS fixes."
//"args": ["-v", "1", "--mission", "2003.191.00", "--noinput", "--no_cleanup" ],
// File "/src/data/resample.py", line 736, IndexError: index -1 is out of bounds for axis 0 with size 0
"args": ["-v", "1", "--mission", "2006.338.11", "--noinput", "--no_cleanup" ],
// "args": ["-v", "1", "--mission", "2006.338.11", "--noinput", "--no_cleanup" ],
// File "/src/data/create_products.py", line 997, in _plot_var AttributeError: 'NoneType' object has no attribute 'get_index'
"args": ["-v", "1", "--mission", "2010.257.00", "--noinput", "--no_cleanup" ],

},
{
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41 changes: 21 additions & 20 deletions src/data/create_products.py
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Original file line number Diff line number Diff line change
Expand Up @@ -992,26 +992,27 @@ def _plot_var( # noqa: C901, PLR0912, PLR0913, PLR0915
levels=np.linspace(v2_5, v97_5, num_colors),
)

# Blank out the countoured data below the bottom of the profiles
xb = np.append(
profile_bottoms.get_index("dist").to_numpy(),
[
curr_ax.get_xlim()[1],
curr_ax.get_xlim()[1],
curr_ax.get_xlim()[0],
curr_ax.get_xlim()[0],
],
)
yb = np.append(
profile_bottoms.to_numpy(),
[
profile_bottoms.to_numpy()[-1],
curr_ax.get_ylim()[0],
curr_ax.get_ylim()[0],
profile_bottoms.to_numpy()[0],
],
)
curr_ax.fill(list(reversed(xb)), list(reversed(yb)), "w")
if profile_bottoms is not None:
# Blank out the countoured data below the bottom of the profiles
xb = np.append(
profile_bottoms.get_index("dist").to_numpy(),
[
curr_ax.get_xlim()[1],
curr_ax.get_xlim()[1],
curr_ax.get_xlim()[0],
curr_ax.get_xlim()[0],
],
)
yb = np.append(
profile_bottoms.to_numpy(),
[
profile_bottoms.to_numpy()[-1],
curr_ax.get_ylim()[0],
curr_ax.get_ylim()[0],
profile_bottoms.to_numpy()[0],
],
)
curr_ax.fill(list(reversed(xb)), list(reversed(yb)), "w")

# Add bathymetry as grey filled contour if available
if bottom_depths is not None:
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