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mbari-org / auv-python Public

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Replace poetry with uv and update packages#28

Merged

MBARIMike merged 66 commits intombari-org:mainmbari-org/auv-python:mainfrom

MBARIMike:uv-updateMBARIMike/auv-python:uv-updateCopy head branch name to clipboard

Jun 12, 2025

Conversation Commits66 (66)Checks Files changed

Merged

Replace poetry with uv and update packages#28
MBARIMike merged 66 commits intombari-org:mainfrom
MBARIMike:uv-update

Commits

Commits on Jun 4, 2025

Initial uv pyproject.toml and uv.lock files.
MBARIMike
committed
Pass lower() case 'S' to Pandas in anticipation of future warning.
MBARIMike
committed
Bypass numpy.core._exceptions not being found until we can figure out how to trap this in newer versions of numpy.
MBARIMike
committed
Removed exception handling for UFuncTypeError - processed Dorado 2008.010.010 and did not see the original exception.
MBARIMike
committed
Test Dorado 2008.010.010.
MBARIMike
committed
Add pysolar.
MBARIMike
committed

Commits on Jun 5, 2025

Add back the ruff settings.
MBARIMike
committed
Use uv and python3.13 in ci and in production docker.
MBARIMike
committed
Re-install pre-commit using uv.
MBARIMike
committed
Modify pre-commit to install from pyproject.toml.
MBARIMike
committed
Reformatted using new pre-commit setup.
MBARIMike
committed
Change all freq to freq.lower() for new pandas.
MBARIMike
committed
Change [dependency-groups] to [project.optional-dependencies].
MBARIMike
committed

Commits on Jun 6, 2025

Frustratringly trying to sync pre-commit and vscode ruff behavior.
MBARIMike
committed
Following a 'uv sync'.
MBARIMike
committed

Commits on Jun 9, 2025

Change [project.optional-dependencies] back to [dependency-groups].
MBARIMike
committed
Updated with Python 3.12.
MBARIMike
committed
No longer needed with uv.
MBARIMike
committed
Update EXPECTED_SIZE_LOCALs.
MBARIMike
committed
Make the linter happier.
MBARIMike
committed
Use separate EXPECTED_SIZE_GITHUB and EXPECTED_SIZE_ACT values.
MBARIMike
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Downgrade to Python 3.12.
MBARIMike
committed
Use official GitHub pre-commit/action.
MBARIMike
committed
Correct typo in pre-commit/action version.
MBARIMike
committed
Remove lint job, rename test to pytest.
MBARIMike
committed
Rename pre-commit to lint.
MBARIMike
committed
Use just 'extra_args' to avoid warning in CI.
MBARIMike
committed
Add python version, remove comma.
MBARIMike
committed
Remove ruff-format.
MBARIMike
committed
Add args to ruff.
MBARIMike
committed
Correct the ruff args.
MBARIMike
committed
Okay, don't use ruff arg, use --all-files.
MBARIMike
committed
Use "1s" literal for resample()ing.
MBARIMike
committed
Remove RuntimeWarnings.
MBARIMike
committed
Suppress RuntimeWarnings instead of altering values of Tr.
MBARIMike
committed

Commits on Jun 10, 2025

Remove top level files no longer used.
MBARIMike
committed
Add jupyter.
MBARIMike
committed
Add MD5 checksum test.
MBARIMike
committed
Test processing with new uv-update code.
MBARIMike
committed
Changed for using python3.12 in uv-update.
MBARIMike
committed
Update following replacing poetry with uv.
MBARIMike
committed

Commits on Jun 11, 2025

Removed as contributing instructions are now in README.md.
MBARIMike
committed
Remove unused files created by cookiecutter-data-science.
MBARIMike
committed
Update Copyright date and change to MBARI.
MBARIMike
committed
Makefile is not used.
MBARIMike
committed
A few revisions.
MBARIMike
committed
Update to python3.12.
MBARIMike
committed
Updating this Notebook required 'uv add ipympl'.
MBARIMike
committed
Try a new value for EXPECTED_MD5_GITHUB.
MBARIMike
committed
Updates for using python3.12.
MBARIMike
committed
Add pooch and pyarrow so that the 5.0 Notebook works.
MBARIMike
committed
Updates for using python3.12.
MBARIMike
committed
Add rolling so that the 5.2 Notebook works.
MBARIMike
committed
Add rolling so that the 5.2 Notebook works.
MBARIMike
committed
Add --noinput for more automated processing.
MBARIMike
committed
Add statsmodels so that Notebook 5.3 works.
MBARIMike
committed
Make work with python3.12.
MBARIMike
committed
Add mission 2025.161.00.
MBARIMike
committed

Commits on Jun 12, 2025

Make work with python3.12.
MBARIMike
committed
Update for python3.12 and use new known_hash.
MBARIMike
committed
Scripts in src/data are executable so remove 'python'.
MBARIMike
committed
Update for use with python3.12.
MBARIMike
committed
Update for python3.12. Interactive cells have same problem as the 5.9 Notebook.
MBARIMike
committed
UIpdated for use with pyhon3.12.
MBARIMike
committed
Update for python3.12 and add "bbp" plots.
MBARIMike
committed
Remove old execution instructions and update known_hash.
MBARIMike
committed

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