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Use pattern matches for original source log file: YYYYMMDDHHMMSS_YYYYMMDDHHMMSS.nc4 #84

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Merged
MBARIMike merged 1 commit into from
Dec 3, 2025
Merged

Use pattern matches for original source log file: YYYYMMDDHHMMSS_YYYYMMDDHHMMSS.nc4 #84

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4 changes: 2 additions & 2 deletions .vscode/launch.json
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Original file line number Diff line number Diff line change
Expand Up @@ -358,9 +358,9 @@
// Plankitvore deployment for CeNCOOS Syncro - whole month of April 2025
//"args": ["-v", "1", "--auv_name", "ahi", "--start", "20250401T000000", "--end", "20250502T000000", "--noinput", "--num_cores", "1", "--no_cleanup"]
// Fails with ValueError: different number of dimensions on data and dims: 2 vs 1 for wetlabsubat_digitized_raw_ad_counts variable
"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250604_20250616/20250608T020852/202506080209_202506081934.nc4", "--no_cleanup", "--clobber"]
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250604_20250616/20250608T020852/202506080209_202506081934.nc4", "--no_cleanup", "--clobber"]
// Full month of June 2025 for Pontus with WetLabsUBAT Group data
//"args": ["-v", "1", "--auv_name", "pontus", "--start", "20250601T000000", "--end", "20250702T000000", "--noinput", "--num_cores", "1", "--no_cleanup"]
"args": ["-v", "1", "--auv_name", "pontus", "--start", "20250601T000000", "--end", "20250721T000000", "--noinput", "--num_cores", "1", "--no_cleanup"]
//"args": ["-v", "1", "--auv_name", "pontus", "--start", "20250601T000000", "--end", "20250702T000000", "--noinput", "--num_cores", "1", "--no_cleanup", "--clobber"]
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250623_20250707/20250707T043011/slate.nc4", "--no_cleanup"]
},
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17 changes: 11 additions & 6 deletions src/data/process.py
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Original file line number Diff line number Diff line change
Expand Up @@ -308,6 +308,8 @@ def _find_log_files_in_datetime_dir(
self, datetime_dir: Path, start_dt: datetime, end_dt: datetime
) -> list:
"""Find log files in a datetime directory if it's in range."""
import re

log_files = []

# Normalize and parse directory datetime
Expand All @@ -321,12 +323,15 @@ def _find_log_files_in_datetime_dir(

# Check if directory datetime is in range
if start_dt <= dir_dt <= end_dt:
# Look for main log file (*.nc4 file)
nc4_files = list(datetime_dir.glob("*.nc4"))
if nc4_files:
relative_path = str(nc4_files[0].relative_to(Path(self.vehicle_dir)))
log_files.append(relative_path)
self.logger.debug("Found log file: %s", relative_path)
# Look for main log file (*.nc4 file) but exclude _combined.nc4 and _align.nc4
# Pattern matches: YYYYMMDDHHMMSS_YYYYMMDDHHMMSS.nc4
# Example: 202506072219_202506072336.nc4
log_pattern = re.compile(r"^\d{12}_\d{12}\.nc4$")
for nc4_file in datetime_dir.glob("*.nc4"):
if log_pattern.match(nc4_file.name):
relative_path = str(nc4_file.relative_to(Path(self.vehicle_dir)))
log_files.append(relative_path)
self.logger.debug("Found log file: %s", relative_path)

return log_files

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