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Add correct_biolume_proxies() step for wetlabsubat data from pontus. #92

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Merged
MBARIMike merged 1 commit into from
Dec 11, 2025
Merged

Add correct_biolume_proxies() step for wetlabsubat data from pontus. #92

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4 changes: 2 additions & 2 deletions .vscode/launch.json
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Original file line number Diff line number Diff line change
Expand Up @@ -373,7 +373,7 @@
// Fails with ValueError: different number of dimensions on data and dims: 2 vs 1 for wetlabsubat_digitized_raw_ad_counts variable
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250604_20250616/20250608T020852/202506080209_202506081934.nc4", "--no_cleanup", "--clobber"]
// ValueError: Dimension mismatch: wetlabsubat_digitized_raw_ad_counts_time has 33154 elements but wetlabsubat_hv_step_calibration_coefficient_time has 33155 elements
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250623_20250707/20250626T041517/202506260415_202506261400.nc4", "--no_cleanup"]
"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250623_20250707/20250626T041517/202506260415_202506261400.nc4", "--no_cleanup"]
// ValueError: coords is not dict-like, but it has 1 items, which does not match the 2 dimensions of the data
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250623_20250707/20250626T140000/202506261400_202506262031.nc4", "--no_cleanup"]
// Full month of June 2025 for Pontus with WetLabsUBAT Group data
Expand All @@ -392,7 +392,7 @@
// For loading stoqs_lrauv_sep2025 - which has really bad nav in _2S_scieng.nc files
//"args": ["-v", "1", "--auv_name", "brizo", "--start", "20250901T000000", "--end", "20251001T000000", "--no_cleanup"]
// No GPS data for a log_file that has an ESP Sample
"args": ["-v", "1", "--log_file", "brizo/missionlogs/2025/20250916_20250922/20250920T070029/202509200700_202509201900.nc4", "--no_cleanup"]
//"args": ["-v", "1", "--log_file", "brizo/missionlogs/2025/20250916_20250922/20250920T070029/202509200700_202509201900.nc4", "--no_cleanup"]
},

]
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16 changes: 12 additions & 4 deletions src/data/resample.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1611,10 +1611,18 @@ def resample_variable( # noqa: PLR0913
proxy_cal_factor, proxy_ratio_adinos = self.set_proxy_parameters(
mission_start, self.auv_name
)
self.add_wetlabsubat_proxies(
freq=freq,
proxy_cal_factor=proxy_cal_factor,
proxy_ratio_adinos=proxy_ratio_adinos,
wetlabsubat_fluo, wetlabsubat_sunsets, wetlabsubat_sunrises = (
self.add_wetlabsubat_proxies(
freq=freq,
proxy_cal_factor=proxy_cal_factor,
proxy_ratio_adinos=proxy_ratio_adinos,
)
)
self.correct_biolume_proxies(
wetlabsubat_fluo,
wetlabsubat_sunsets,
wetlabsubat_sunrises,
depth_threshold,
)
else:
self.df_o[variable] = self.ds[variable].to_pandas()
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