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Moving plot_columns to production, WIP support --log_file option #99

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Merged
MBARIMike merged 7 commits into from
Dec 17, 2025
Merged

Moving plot_columns to production, WIP support --log_file option #99

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6a25237
WIP: Add log_file arg, try to fix Linux map drawing.
MBARIMike Dec 17, 2025
17a849c
Respect --log_file in create_products.py.
MBARIMike Dec 17, 2025
bc3c951
Improved coordinate resampling to minimize NaN introduction
MBARIMike Dec 17, 2025
b40865a
Log warning if profile_bottoms can't be returned.
MBARIMike Dec 17, 2025
d59b763
Try to remove warnings.
MBARIMike Dec 17, 2025
3af30ed
Do not execute plotting code during tests, escpecially in CI.
MBARIMike Dec 17, 2025
3c0d11d
Add comments for creating mission used for test_process_dorado.py in CI.
MBARIMike Dec 17, 2025
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13 changes: 10 additions & 3 deletions .vscode/launch.json
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Original file line number Diff line number Diff line change
Expand Up @@ -205,8 +205,9 @@
//"args": ["--auv_name", "dorado", "--mission", "2023.123.00", "-v", "1"],
//"args": ["-v", "2", "--log_file", "brizo/missionlogs/2025/20250916_20250922/20250916T230652/202509162306_202509180305.nc4"]
//"args": ["--auv_name", "dorado", "--mission", "2025.316.02", "-v", "1"],
"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250604_20250616/20250608T020852/202506080209_202506081934.nc4"],
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2025/20250604_20250616/20250608T020852/202506080209_202506081934.nc4"],
//"args": ["-v", "1", "--log_file", "ahi/missionlogs/2025/20250414_20250418/20250414T205440/202504142054_202504150400.nc4"],
"args": ["--auv_name", "dorado", "--mission", "2022.201.00", "-v", "1"],
},
{
"name": "5.0 - archive.py",
Expand Down Expand Up @@ -347,7 +348,9 @@
"request": "launch",
"program": "${workspaceFolder}/src/data/process_Dorado389.py",
"console": "integratedTerminal",
"args": ["-v", "1", "--noinput", "--no_cleanup", "--download", "--mission", "2011.256.02"]
// Mission used for testing: Execute to replace file at:
// https://dods.mbari.org/opendap/data/auvctd/surveys/2011/netcdf/Dorado389_2011.256.02_1S.nc.html
"args": ["-v", "1", "--noinput", "--no_cleanup", "--mission", "2011.256.02", "--clobber"]
},
{
"name": "process_lrauv",
Expand Down Expand Up @@ -396,7 +399,11 @@
// Has nighttime data for proxys to be computed
//"args": ["-v", "1", "--log_file", "pontus/missionlogs/2024/20240725_20240729/20240729T023020/202407290230_202407291556.nc4", "--no_cleanup"]
// Testing for adding crontab entries for process_lrauv
"args": ["-v", "1", "--last_n_days", "30", "--no_cleanup"]
//"args": ["-v", "1", "--last_n_days", "30", "--no_cleanup"]
// Testing for making 2column plot work with process_lrauv from an MBTS log_file
//"args": ["-v", "1", "--log_file", "daphne/missionlogs/2025/20250721_20250723/20250721T211348/202507212114_202507222147.nc4", "--no_cleanup"]
// A log_file showing temperature not looking right in stoqs_lrauv_jul2024_t, as shared on Slack plankton-proxies
"args": ["-v", "1", "--log_file", "pontus/missionlogs/2024/20240715_20240725/20240723T023501/202407230235_202407232319.nc4", "--no_cleanup"]
},

]
Expand Down
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